Asako Koike

According to our database, Asako Koike authored at least 16 papers between 2004 and 2019.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2019

Parallel Computation of the Burrows-Wheeler Transform of Short Reads Using Prefix Parallelism.

Kouichi Kimura, Asako Koike

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

2015

Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read data.

Kouichi Kimura, Asako Koike

BMC Bioinform., December, 2015

Ultrafast SNP analysis using the Burrows-Wheeler transform of short-read data.

Kouichi Kimura, Asako Koike

Bioinform., 2015

2014

Genome Mapping by a 60-core Processor.

Tomohiro Yasuda, Asako Koike

Proceedings of the BIOINFORMATICS 2014, 2014

2012

A Bit-Parallel Dynamic Programming Algorithm Suitable for DNA Sequence Alignment.

Kouichi Kimura, Asako Koike, Kenta Nakai

J. Bioinform. Comput. Biol., 2012

2011

SNPInterForest: A new method for detecting epistatic interactions.

Makiko Yoshida, Asako Koike

BMC Bioinform., 2011

Seed-Set Construction by Equi-entropy Partitioning for Efficient and Sensitive Short-Read Mapping.

Kouichi Kimura, Asako Koike, Kenta Nakai

Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011

2010

Figure classification in biomedical literature to elucidate disease mechanisms, based on pathways.

Natsu Ishii, Asako Koike, Yasunori Yamamoto, Toshihisa Takagi

Artif. Intell. Medicine, 2010

2009

Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences.

Kouichi Kimura, Yutaka Suzuki, Sumio Sugano, Asako Koike

J. Comput. Biol., 2009

Classifying Biomedical Figures Using Combination of Bag of Keypoints and Bag of Words.

Asako Koike, Toshihisa Takagi

Proceedings of the 2009 International Conference on Complex, 2009

2008

Figure Classification in Biomedical Literature towards Figure Mining.

Natsu Ishii, Asako Koike, Yasunori Yamamoto, Toshihisa Takagi

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007

Knowledge discovery based on an implicit and explicit conceptual network.

Asako Koike, Toshihisa Takagi

J. Assoc. Inf. Sci. Technol., 2007

2006

Improving the Performance of an SVM-Based Method for Predicting Protein-Protein Interactions.

Shinsuke Dohkan, Asako Koike, Toshihisa Takagi

Silico Biol., 2006

2005

Automatic extraction of gene/protein biological functions from biomedical text.

Asako Koike, Yoshiki Niwa, Toshihisa Takagi

Bioinform., 2005

2004

PRIME: automatically extracted PRotein Interactions and Molecular Information databas.

Asako Koike, Toshihisa Takagi

Silico Biol., 2004

Prediction of Protein-Protein Interactions Using Support Vector Machines.

Shinsuke Dohkan, Asako Koike, Toshihisa Takagi

Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004