Arul M. Chinnaiyan

According to our database, Arul M. Chinnaiyan authored at least 14 papers between 2002 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2018

MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions.

Alexander Gawronski, Michael Uhl, Yajia Zhang, Yen-Yi Lin, Yashar S. Niknafs, Varune R. Ramnarine, Rohit Malik, Felix Feng, Arul M. Chinnaiyan, Colin C. Collins, Süleyman Cenk Sahinalp, Rolf Backofen

Bioinform., 2018

2017

Integrative clinical genomics of metastatic cancer.

Dan R. Robinson, Yi-Mi Wu, Robert J. Lonigro, Pankaj Vats, Erin Cobain, Jessica Everett, Xuhong Cao, Erica Rabban, Chandan Kumar-Sinha, Victoria Raymond, Scott Schuetze, Ajjai Alva, Javed Siddiqui, Rashmi Chugh, Francis Worden, Mark M. Zalupski, Jeffrey W. Innis, Rajen J. Mody, Scott A. Tomlins, David Lucas, Laurence H. Baker, Nithya Ramnath, Ann F. Schott, Daniel F. Hayes, Joseph Vijai, Kenneth Offit, Elena M. Stoffel, J. Scott Roberts, David C. Smith, Lakshmi P. Kunju, Moshe Talpaz, Marcin Cieslik, Arul M. Chinnaiyan

Nat., 2017

2016

Two-pass alignment improves novel splice junction quantification.

Brendan A. Veeneman, Sudhanshu Shukla, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Alexey I. Nesvizhskii

Bioinform., 2016

2015

rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data.

Yang Shi, Arul M. Chinnaiyan, Hui Jiang

Bioinform., 2015

2012

Oculus: faster sequence alignment by streaming read compression.

Brendan A. Veeneman, Matthew K. Iyer, Arul M. Chinnaiyan

BMC Bioinform., 2012

Gene Fusion Markup Language: a prototype for exchanging gene fusion data.

Shanker Kalyana-Sundaram, Achiraman Shanmugam, Arul M. Chinnaiyan

BMC Bioinform., 2012

2011

ChimeraScan: a tool for identifying chimeric transcription in sequencing data.

Matthew K. Iyer, Arul M. Chinnaiyan, Christopher A. Maher

Bioinform., 2011

2010

HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data.

Zhaohui S. Qin, Jianjun Yu, Jincheng Shen, Christopher A. Maher, Ming Hu, Shanker Kalyana-Sundaram, Jindan Yu, Arul M. Chinnaiyan

BMC Bioinform., 2010

2009

ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches.

You Jung Kim, Nikhil Teletia, Victor Ruotti, Christopher A. Maher, Arul M. Chinnaiyan, Ron M. Stewart, James A. Thomson, Jignesh M. Patel

Bioinform., 2009

2007

From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research.

Jomol P. Mathew, Barry S. Taylor, Gary D. Bader, Saiju Pyarajan, Marco Antoniotti, Arul M. Chinnaiyan, Chris Sander, Steven J. Burakoff, Bud Mishra

PLoS Comput. Biol., 2007

A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments.

Hyungwon Choi, Ronglai Shen, Arul M. Chinnaiyan, Debashis Ghosh

BMC Bioinform., 2007

2006

Eigengene-based linear discriminant model for tumor classification using gene expression microarray data.

Ronglai Shen, Debashis Ghosh, Arul M. Chinnaiyan, Zhaoling Meng

Bioinform., 2006

2005

Internet-based profiler system as integrative framework to support translational research.

Robert Kim, Francesca Demichelis, Jeffery Tang, Alberto Riva, Ronglai Shen, Doug F. Gibbs, Vasudeva Mahavishno, Arul M. Chinnaiyan, Mark A. Rubin

BMC Bioinform., 2005

2002

Mixture modelling of gene expression data from microarray experiments.

Debashis Ghosh, Arul M. Chinnaiyan

Bioinform., 2002