Artemis G. Hatzigeorgiou

According to our database, Artemis G. Hatzigeorgiou authored at least 54 papers between 1995 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Leveraging Large Language Models for Information Extraction: Identifying microRNA - Gene Interactions in Biomedical Literature.

Steve Stavropoulos, Elissavet Zacharopoulou, Spiros V. Georgakopoulos, Sotiris K. Tasoulis, Vassilis P. Plagianakos, Artemis G. Hatzigeorgiou

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2024

A Machine Learning algorithm for Predicting Translation Initiation Start Positions.

Stefanos Digenis, Dimitris Grigoriadis, Marios Miliotis, Artemis G. Hatzigeorgiou

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2024

2023

DIANA-miRPath v4.0: expanding target-based miRNA functional analysis in cell-type and tissue contexts.

Spyros Tastsoglou, Giorgos Skoufos, Marios Miliotis, Dimitra Karagkouni, Ioannis Koutsoukos, Anna Karavangeli, Filippos S. Kardaras, Artemis G. Hatzigeorgiou

Nucleic Acids Res., July, 2023

DIANA-microT 2023: including predicted targets of virally encoded miRNAs.

Spyros Tastsoglou, Athanasios Alexiou, Dimitra Karagkouni, Giorgos Skoufos, Elissavet Zacharopoulou, Artemis G. Hatzigeorgiou

Nucleic Acids Res., July, 2023

2022

DIANA-miTED: a microRNA tissue expression database.

Ioannis Kavakiotis, Athanasios Alexiou, Spyros Tastsoglou, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2022

DeepTSS: multi-branch convolutional neural network for transcription start site identification from CAGE data.

Dimitris Grigoriadis, Nikos Perdikopanis, Georgios K. Georgakilas, Artemis G. Hatzigeorgiou

BMC Bioinform., 2022

2021

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.

Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg

Nucleic Acids Res., 2021

Peryton: a manual collection of experimentally supported microbe-disease associations.

Giorgos Skoufos, Filippos S. Kardaras, Athanasios Alexiou, Ioannis Kavakiotis, Anastasia Lambropoulou, Vasiliki Kotsira, Spyros Tastsoglou, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2021

DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs.

Nikos Perdikopanis, Georgios K. Georgakilas, Dimitris Grigoriadis, Vasileios Pierros, Ioannis Kavakiotis, Panagiotis Alexiou, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2021

2020

DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts.

Dimitra Karagkouni, Maria D. Paraskevopoulou, Spyros Tastsoglou, Giorgos Skoufos, Anna Karavangeli, Vasileios Pierros, Elissavet Zacharopoulou, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2020

DiS-TSS: An Annotation Agnostic Algorithm for TSS Identification.

Dimitris Grigoriadis, Nikos Perdikopanis, Georgios K. Georgakilas, Artemis G. Hatzigeorgiou

Proceedings of the Bioinformatics and Biomedical Engineering, 2020

2018

DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions.

Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2018

ECCB 2018: The 17th European Conference on Computational Biology.

Artemis G. Hatzigeorgiou, Pantelis G. Bagos, Panayiotis V. Benos, Christoforos Nikolaou, Yves Moreau, Ioannis Kavakiotis

Bioinform., 2018

2016

DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data.

Ioannis S. Vlachos, Thanasis Vergoulis, Maria D. Paraskevopoulou, Filopoimin Lykokanellos, Georgios K. Georgakilas, Penny Georgiou, Serafeim Chatzopoulos, Dimitra Karagkouni, Foteini Christodoulou, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2016

DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts.

Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios K. Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2016

DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators.

Georgios K. Georgakilas, Ioannis S. Vlachos, Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ilias Kanellos, Panayiotis Tsanakas, Dimitris Dellis, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2016

2015

DIANA-miRPath v3.0: deciphering microRNA function with experimental support.

Ioannis S. Vlachos, Konstantinos Zagganas, Maria D. Paraskevopoulou, Georgios K. Georgakilas, Dimitra Karagkouni, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2015

DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions.

Ioannis S. Vlachos, Maria D. Paraskevopoulou, Dimitra Karagkouni, Georgios K. Georgakilas, Thanasis Vergoulis, Ilias Kanellos, Ioannis-Laertis Anastasopoulos, Sofia Maniou, Konstantina Karathanou, Despina Kalfakakou, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2015

mirPub: a database for searching microRNA publications.

Thanasis Vergoulis, Ilias Kanellos, Nikos Kostoulas, Georgios K. Georgakilas, Timos K. Sellis, Artemis G. Hatzigeorgiou, Theodore Dalamagas

Bioinform., 2015

TarMiner: automatic extraction of miRNA targets from literature.

Rodothea-Myrsini Tsoupidi, Ilias Kanellos, Thanasis Vergoulis, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou, Theodore Dalamagas

Proceedings of the 27th International Conference on Scientific and Statistical Database Management, 2015

MirPub v2: Towards Ranking and Refining miRNA Publication Search Results.

Ilias Kanellos, Vasiliki Vlachokyriakou, Thanasis Vergoulis, Georgios K. Georgakilas, Yannis Vassiliou, Artemis G. Hatzigeorgiou, Theodore Dalamagas

Proceedings of the Research and Advanced Technology for Digital Libraries, 2015

2014

Publishing Diachronic Life Science Linked Data.

Katerina Gkirtzou, Thanasis Vergoulis, Artemis G. Hatzigeorgiou, Timos K. Sellis, Theodore Dalamagas

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

MR-microT: a MapReduce-based MicroRNA target prediction method.

Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou, Stelios Sartzetakis, Timos K. Sellis

Proceedings of the Conference on Scientific and Statistical Database Management, 2014

2013

DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows.

Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Ioannis S. Vlachos, Thanasis Vergoulis, Martin Reczko, Christos Filippidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2013

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs.

Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Martin Reczko, Manolis Maragkakis, Theodore M. Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2013

2012

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways.

Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios K. Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2012

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.

Thanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2012

Functional microRNA targets in protein coding sequences.

Martin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou

Bioinform., 2012

Publishing life science data as linked open data: the case study of miRBase.

Theodore Dalamagas, Nikos Bikakis, George Papastefanatos, Yannis Stavrakas, Artemis G. Hatzigeorgiou

Proceedings of the International Workshop on Open Data, 2012

TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction.

Thanasis Vergoulis, Michail Alexakis, Theodore Dalamagas, Manolis Maragkakis, Artemis G. Hatzigeorgiou, Timos K. Sellis

Proceedings of the Scientific and Statistical Database Management, 2012

2011

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association.

Manolis Maragkakis, Thanasis Vergoulis, Panagiotis Alexiou, Martin Reczko, Kyriaki Plomaritou, Mixail Gousis, Kornilios Kourtis, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2011

2010

miRGen 2.0: a database of microRNA genomic information and regulation.

Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos K. Sellis, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2010

FreePub: Collecting and Organizing Scientific Material Using Mindmaps.

Theodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010

Predicting miRNA targets utilizing an Extended Profile HMM.

Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch

Proceedings of the German Conference on Bioinformatics 2010, 2010

2009

The database of experimentally supported targets: a functional update of TarBase.

Giorgos L. Papadopoulos, Martin Reczko, Victor A. Simossis, Praveen Sethupathy, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2009

DIANA-microT web server: elucidating microRNA functions through target prediction.

Manolis Maragkakis, Martin Reczko, Victor A. Simossis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Theodore Dalamagas, Giorgos Giannopoulos, Georgios I. Goumas, Evangelos Koukis, Kornilios Kourtis, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2009

Accurate microRNA target prediction correlates with protein repression levels.

Manolis Maragkakis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Martin Reczko, Theodore Dalamagas, Giorgos Giannopoulos, George I. Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A. Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou

BMC Bioinform., 2009

DIANA-mirPath: Integrating human and mouse microRNAs in pathways.

Giorgos L. Papadopoulos, Panagiotis Alexiou, Manolis Maragkakis, Martin Reczko, Artemis G. Hatzigeorgiou

Bioinform., 2009

Lost in translation: an assessment and perspective for computational microRNA target identification.

Panagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou

Bioinform., 2009

2007

Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction.

Axel Bernal, Koby Crammer, Artemis G. Hatzigeorgiou, Fernando Pereira

PLoS Comput. Biol., 2007

miRGen: a database for the study of animal microRNA genomic organization and function.

Molly Megraw, Praveen Sethupathy, Benoit Corda, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2007

2006

Support Vector Machines for Predicting microRNA Hairpins.

Karol Szafranski, Molly Megraw, Martin Reczko, Artemis G. Hatzigeorgiou

Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006

Simple Methods of Finding Short Protein Coding Sequences.

Hanno Hinsch, Artemis G. Hatzigeorgiou

Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006

2005

Computational Identification of Regulatory Factors Involved in MicroRNA Transcription.

Praveen Sethupathy, Molly Megraw, M. Inmaculada Barrasa, Artemis G. Hatzigeorgiou

Proceedings of the Advances in Informatics, 2005

2002

Artificial Neural Networks Based Systems for Recognition of Genomic Signals and Regions: A Review.

Vladimir B. Bajic, Suisheng Tang, Hao Han, Vladimir Brusic, Artemis G. Hatzigeorgiou

Informatica (Slovenia), 2002

Translation initiation start prediction in human cDNAs with high accuracy.

Artemis G. Hatzigeorgiou

Bioinform., 2002

Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural Networks.

Martin Reczko, Petko Fiziev, Eike Staub, Artemis G. Hatzigeorgiou

Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

2001

DIANA-EST: a statistical analysis.

Artemis G. Hatzigeorgiou, Petko Fiziev, Martin Reczko

Bioinform., 2001

2000

Prediction of human transnational initiation sites using a multiple neural network approach.

Christian Derst, Martin Reczko, Artemis G. Hatzigeorgiou

Int. J. Comput. Syst. Signals, 2000

Translation Initiation Site Prediction in Eucariotic MRNAs with High Accuracy.

Artemis G. Hatzigeorgiou

Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000

1999

Feature recognition on expressed sequence tags of human DNA.

Artemis G. Hatzigeorgiou, Martin Reczko

Proceedings of the International Joint Conference Neural Networks, 1999

1996

Computational analysis of transcriptional regulatory elements: a field in flux.

Philipp Bucher, James W. Fickett, Artemis G. Hatzigeorgiou

Comput. Appl. Biosci., 1996

Detection of Eukaryotic POL II Promoters with Multi-State Time-Delay Neural Networks.

Niels Mache, Paul Levi, Artemis G. Hatzigeorgiou, Martin Reczko

Proceedings of the German Conference on Bioinformatics, 1996

1995

A parallel neural network simulator on the connection machine CM-5.

Martin Reczko, Artemis G. Hatzigeorgiou, Niels Mache, Andreas Zell, Sándor Suhai

Comput. Appl. Biosci., 1995