Arndt von Haeseler

According to our database, Arndt von Haeseler authored at least 40 papers between 1988 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Learning From an Artificial Neural Network in Phylogenetics.

Alina F. Leuchtenberger, Arndt von Haeseler

IEEE ACM Trans. Comput. Biol. Bioinform., 2024

Neutral competition explains the clonal composition of neural organoids.

Florian G. Pflug, Simon Haendeler, Christopher Esk, Dominik Lindenhofer, Juergen A. Knoblich, Arndt von Haeseler

PLoS Comput. Biol., 2024

2023

SVhound: detection of regions that harbor yet undetected structural variation.

Luis F. Paulin, Muthuswamy Raveendran, R. Alan Harris, Jeffrey Rogers, Arndt von Haeseler, Fritz J. Sedlazeck

BMC Bioinform., December, 2023

2022

InspectorCell: Finding Ground Truth in Multiplexed Microscopy Images.

Andre Gosselink, Tatsiana Hofer, Elvira Criado-Moronati, Arndt von Haeseler, Jutta Kollet

J. Open Source Softw., December, 2022

2019

Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets.

Tobias Neumann, Veronika A. Herzog, Matthias Muhar, Arndt von Haeseler, Johannes Zuber, Stefan L. Ameres, Philipp Rescheneder

BMC Bioinform., 2019

2018

TRUmiCount: correctly counting absolute numbers of molecules using unique molecular identifiers.

Florian G. Pflug, Arndt von Haeseler

Bioinform., 2018

2017

An Enumerative Combinatorics Model for Fragmentation Patterns in RNA Sequencing Provides Insights into Nonuniformity of the Expected Fragment Starting-Point and Coverage Profile.

Celine Prakash, Arndt von Haeseler

J. Comput. Biol., 2017

2016

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis.

Jana Trifinopoulos, Lam-Tung Nguyen, Arndt von Haeseler, Bui Quang Minh

Nucleic Acids Res., 2016

A new phylogenetic tree sampling method for maximum parsimony bootstrapping and proof-of-concept implementation.

Diep Thi Hoang, Le Sy Vinh, Tomás Flouri, Alexandros Stamatakis, Arndt von Haeseler, Bui Quang Minh

Proceedings of the 2016 Eighth International Conference on Knowledge and Systems Engineering, 2016

2015

Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference.

Olga Chernomor, Bui Quang Minh, Arndt von Haeseler

J. Comput. Biol., 2015

2013

NextGenMap: fast and accurate read mapping in highly polymorphic genomes.

Fritz J. Sedlazeck, Philipp Rescheneder, Arndt von Haeseler

Bioinform., 2013

2012

TreeSnatcher plus: capturing phylogenetic trees from images.

Thomas Laubach, Arndt von Haeseler, Martin J. Lercher

BMC Bioinform., 2012

On the group theoretical background of assigning stepwise mutations onto phylogenies.

Mareike Fischer, Steffen Klaere, Minh Anh Nguyen, Arndt von Haeseler

Algorithms Mol. Biol., 2012

MASon: Million Alignments in Seconds - A Platform Independent Pairwise Sequence Alignment Library for next Generation Sequencing Data.

Philipp Rescheneder, Arndt von Haeseler, Fritz J. Sedlazeck

Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

2010

FACT: Functional annotation transfer between proteins with similar feature architectures.

Tina Koestler, Arndt von Haeseler, Ingo Ebersberger

BMC Bioinform., 2010

Accuracy of phylogeny reconstruction methods combining overlapping gene data sets.

Anne Kupczok, Heiko A. Schmidt, Arndt von Haeseler

Algorithms Mol. Biol., 2010

ACOPHY: A Simple and General Ant Colony Optimization Approach for Phylogenetic Tree Reconstruction.

Huy Q. Dinh, Bui Quang Minh, Hoang Xuan Huan, Arndt von Haeseler

Proceedings of the Swarm Intelligence - 7th International Conference, 2010

2009

Budgeted Phylogenetic Diversity on Circular Split Systems.

Bui Quang Minh, Fabio Pardi, Steffen Klaere, Arndt von Haeseler

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Comment on 'A congruence index for testing topological similarity between trees'.

Anne Kupczok, Arndt von Haeseler

Bioinform., 2009

2008

An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.

Anne Kupczok, Arndt von Haeseler, Steffen Klaere

J. Comput. Biol., 2008

Knowledge Acquisition Focused Cooperative Development of Bio-ontologies - A Case Study with BIO2Me.

Dominic Mainz, Ingo Paulsen, Indra Mainz, Katrin Weller, Jochen Kohl, Arndt von Haeseler

Proceedings of the Bioinformatics Research and Development, 2008

2007

pIPHULA - parallel inference of population parameters using a likelihood approach.

Heiko A. Schmidt, Arndt von Haeseler, Jutta Buschbom

Bioinform., 2007

TreeSnatcher: coding trees from images.

Thomas Laubach, Arndt von Haeseler

Bioinform., 2007

2006

INVHOGEN: a database of homologous invertebrate genes.

Ingo Paulsen, Arndt von Haeseler

Nucleic Acids Res., 2006

HvrBase++: a phylogenetic database for primate species.

Jochen Kohl, Ingo Paulsen, Thomas Laubach, Achim Radtke, Arndt von Haeseler

Nucleic Acids Res., 2006

<i>In silico</i> sequence evolution with site-specific interactions along phylogenetic trees.

Tanja Gesell, Arndt von Haeseler

Bioinform., 2006

2005

Shortest triplet clustering: reconstructing large phylogenies using representative sets.

Le Sy Vinh, Arndt von Haeseler

BMC Bioinform., 2005

pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.

Bui Quang Minh, Le Sy Vinh, Arndt von Haeseler, Heiko A. Schmidt

Bioinform., 2005

2004

PhyNav: A Novel Approach to Reconstruct Large Phylogenies.

Le Sy Vinh, Heiko A. Schmidt, Arndt von Haeseler

Proceedings of the Classification, 2004

2003

Molecular phylogenetics: parallelized parameter estimation and quartet puzzling.

Heiko A. Schmidt, Ekkehard Petzold, Martin Vingron, Arndt von Haeseler

J. Parallel Distributed Comput., 2003

2002

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.

Heiko A. Schmidt, Korbinian Strimmer, Martin Vingron, Arndt von Haeseler

Bioinform., 2002

2000

Can One Estimate Distances from Pairwise Sequence Alignments?

Roland Fleißner, Dirk Metzler, Arndt von Haeseler

Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000

1999

C-->U editing of apolipoprotein B mRNA in marsupials: identification and characterisation of APOBEC-1 from the American opossum Monodelphus domestica.

T. Fujino, N. Navaratnam, A. Jarmuz, Arndt von Haeseler, James Scott

Nucleic Acids Res., 1999

HvrBase: compilation of mtDNA control region sequences from primates.

Florian Burckhardt, Arndt von Haeseler, Sonja Meyer

Nucleic Acids Res., 1999

1998

Compilation of human mtDNA control region sequences.

Oliva Handt, Sonja Meyer, Arndt von Haeseler

Nucleic Acids Res., 1998

Evolution of DNA or Amino Acid Sequences with Dependent Sites.

Arndt von Haeseler, M. Schoniger

J. Comput. Biol., 1998

1997

Towards Integration of Multiple Alignment and Phylogenetic Tree Construction.

Martin Vingron, Arndt von Haeseler

J. Comput. Biol., 1997

1995

Modeling the Polymerase Chain Reaction.

Gunter Weiss, Arndt von Haeseler

J. Comput. Biol., 1995

Simulating efficiently the evolution of DNA sequences.

M. Schoniger, Arndt von Haeseler

Comput. Appl. Biosci., 1995

1988

Rekonstruktion phylogenetischer Bäume mit Hilfe von Varianten der Vier-Punkt-Bedingung.

Arndt von Haeseler

PhD thesis, 1988