Arif Ozgun Harmanci

According to our database, Arif Ozgun Harmanci authored at least 17 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

FedGMMAT: Federated generalized linear mixed model association tests.

Wentao Li, Han Chen, Xiaoqian Jiang, Arif Ozgun Harmanci

PLoS Comput. Biol., 2024

2022

Privacy-aware estimation of relatedness in admixed populations.

Su Wang, Miran Kim, Wentao Li, Xiaoqian Jiang, Han Chen, Arif Ozgun Harmanci

Briefings Bioinform., November, 2022

The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition.

Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, XiaoFeng Wang, Arif Ozgun Harmanci, Miran Kim, Kai W. Post, Diyue Bu, Tyler Bath, Jihoon Kim, Weijie Liu, Hongbo Chen, Lucila Ohno-Machado

J. Am. Medical Informatics Assoc., 2022

Evaluation of vicinity-based hidden Markov models for genotype imputation.

Su Wang, Miran Kim, Xiaoqian Jiang, Arif Ozgun Harmanci

BMC Bioinform., 2022

SVAT: Secure outsourcing of variant annotation and genotype aggregation.

Miran Kim, Su Wang, Xiaoqian Jiang, Arif Ozgun Harmanci

BMC Bioinform., 2022

2020

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo Glynne Gut, David Haan, Arif Ozgun Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora

Nat., 2020

SCOR: A secure international informatics infrastructure to investigate COVID-19.

Jean Louis Raisaro, Francesco Marino, Juan Ramón Troncoso-Pastoriza, Raphaelle Beau-Lejdstrom, Riccardo Bellazzi, Robert Murphy, Elmer V. Bernstam, Henry Wang, Mauro Bucalo, Yong Chen, Assaf Gottlieb, Arif Ozgun Harmanci, Miran Kim, Yejin Kim, Jeffrey G. Klann, Catherine Klersy, Bradley A. Malin, Marie Méan, Fabian Prasser, Luigia Scudeller, Ali Torkamani, Julien Vaucher, Mamta Puppala, Stephen T. C. Wong, Milana Frenkel-Morgenstern, Hua Xu, Baba Maiyaki Musa, Abdulrazaq G. Habib, Trevor Cohen, Adam B. Wilcox, Hamisu M. Salihu, Heidi Sofia, Xiaoqian Jiang, Jean-Pierre Hubaux

J. Am. Medical Informatics Assoc., 2020

EpiSAFARI: sensitive detection of valleys in epigenetic signals for enhancing annotations of functional elements.

Arif Ozgun Harmanci, Akdes Serin Harmanci, Jyothishmathi Swaminathan, Vidya Gopalakrishnan

Bioinform., 2020

2019

Detecting and Annotating Rare Variants.

Jieming Chen, Akdes Serin Harmanci, Arif Ozgun Harmanci

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

Session Introduction.

Gamze Gürsoy, Arif Ozgun Harmanci, Haixu Tang, Erman Ayday, Steven E. Brenner

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2012

VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.

Lukas Habegger, Suganthi Balasubramanian, David Z. Chen, Ekta Khurana, Andrea Sboner, Arif Ozgun Harmanci, Joel S. Rozowsky, Declan Clarke, Michael Snyder, Mark Gerstein

Bioinform., 2012

2011

TurboFold: Iterative probabilistic estimation of secondary structures for multiple RNA sequences.

Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathews

BMC Bioinform., 2011

Iterative estimation of structures of multiple RNA homologs: Turbofold.

Gaurav Sharma, Arif Ozgun Harmanci, David H. Mathews

Proceedings of the IEEE International Conference on Acoustics, 2011

2009

Joint stochastic sampling for RNA secondary structure prediction.

Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathews

Proceedings of the 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 2009

2008

Probabilistic structural alignment of RNA sequences.

Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathews

Proceedings of the IEEE International Conference on Acoustics, 2008

2007

Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign.

Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathews

BMC Bioinform., 2007

Toward Turbo Decoding of RNA Secondary Structure.

Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathews

Proceedings of the IEEE International Conference on Acoustics, 2007