Anuradha Wickramarachchi

According to our database, Anuradha Wickramarachchi authored at least 16 papers between 2018 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

AskBeacon - Performing genomic data exchange and analytics with natural language.

Anuradha Wickramarachchi, Shakila Tonni, Sonali Majumdar, Sarvnaz Karimi, Sulev Kõks, Brendan Hosking, Jordi Rambla, Natalie A. Twine, Yatish Jain, Denis C. Bauer

CoRR, 2024

Solving genomic puzzles: computational methods for metagenomic binning.

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Nalagampalli Papudeshi, Susanna R. Grigson, George Bouras, Rosa E. Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A. Dinsdale, Robert A. Edwards

Briefings Bioinform., 2024

2022

GraphPlas: Refined Classification of Plasmid Sequences Using Assembly Graphs.

Anuradha Wickramarachchi, Yu Lin

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Binning long reads in metagenomics datasets using composition and coverage information.

Anuradha Wickramarachchi, Yu Lin

Algorithms Mol. Biol., 2022

Metagenomics Binning of Long Reads Using Read-Overlap Graphs.

Anuradha Wickramarachchi, Yu Lin

Proceedings of the Comparative Genomics - 19th International Conference, 2022

2021

Improving metagenomic binning results with overlapped bins using assembly graphs.

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin

Algorithms Mol. Biol., 2021

LRBinner: Binning Long Reads in Metagenomics Datasets.

Anuradha Wickramarachchi, Yu Lin

Proceedings of the 21st International Workshop on Algorithms in Bioinformatics, 2021

2020

Phylogenetic Tree Construction Using K-Mer Forest- Based Distance Calculation.

Gihan Gamage, Nadeeshan Gimhana, Indika Perera, Shanaka Bandara, Thilina Pathirana, Anuradha Wickramarachchi, Vijini Mallawaarachchi

Int. J. Online Biomed. Eng., 2020

MetaBCC-LR: metagenomics binning by coverage and composition for long reads.

Anuradha Wickramarachchi, Vijini Mallawaarachchi, Vaibhav Rajan, Yu Lin

Bioinform., 2020

GraphBin: refined binning of metagenomic contigs using assembly graphs.

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin

Bioinform., 2020

GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs.

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin

Proceedings of the 20th International Workshop on Algorithms in Bioinformatics, 2020

Resource Aware Task Clustering for Scientific Workflow Execution in High Performance Computing Environments.

Ayesh Weerasinghe, Kalana Wijethunga, Randika Jayasekara, Indika Perera, Anuradha Wickramarachchi

Proceedings of the 22nd IEEE International Conference on High Performance Computing and Communications; 18th IEEE International Conference on Smart City; 6th IEEE International Conference on Data Science and Systems, 2020

MetaG: a comprehensive visualization tool to explore metagenomes.

Kalana Wijegunarathna, Uditha Maduranga, Sadeep Weerasinghe, Indika Perera, Anuradha Wickramarachchi

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2018

Enhanced Student Learning in Proteomics - an Interactive Tool Support for Teaching Workflows.

Anuradha Wickramarachchi, Vijini Mallawaarachchi, Dulani Meedeniya, Indika Perera, Anuradha Welivita

Proceedings of the IEEE International Conference on Teaching, 2018

Use of nomadic computing devices for storage synchronization.

Anuradha Wickramarachchi, Dulaj Atapattu, Pamoda Wimalasiri, Ravidu Mallawa Arachchi, Gihan Dias

Proceedings of the 2018 International Conference on Information Networking, 2018

Efficient Bioinformatics Computations through GPU Accelerated Web Services.

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Anuradha Welivita, Indika Perera, Dulani Meedeniya

Proceedings of the 2018 2nd International Conference on Algorithms, Computing and Systems, 2018