Antonio Mucherino

Orcid: 0000-0003-1824-3724

Affiliations:
  • University of Rennes 1, France


According to our database1, Antonio Mucherino authored at least 85 papers between 2008 and 2024.

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Bibliography

2024
An impossible combinatorial counting method in distance geometry.
Discret. Appl. Math., 2024

2023
Variable Neighborhood Search in Hamming Space.
Proceedings of the Large-Scale Scientific Computations - 14th International Conference, 2023

The Coherent Multi-representation Problem with Applications in Structural Biology.
Proceedings of the Bioinformatics and Biomedical Engineering, 2023

The Coherent Multi-representation Problem for Protein Structure Determination.
Proceedings of the Dynamics of Information Systems - 6th International Conference, 2023

2022
Preface: special issue on optimization in distance geometry.
J. Glob. Optim., 2022

A Distance Geometry Procedure Using the Levenberg-Marquardt Algorithm and with Applications in Biology but Not only.
Proceedings of the Bioinformatics and Biomedical Engineering, 2022

A GPU approach to distance geometry in 1D: an implementation in C/CUDA.
Proceedings of the 17th Conference on Computer Science and Intelligence Systems, 2022

On the Feasible Regions Delimiting Natural Human Postures in a Novel Skeletal Representation.
Proceedings of the 17th Conference on Computer Science and Intelligence Systems, 2022

2021
The Referenced Vertex Ordering Problem: Theory, Applications, and Solution Methods.
Open J. Math. Optim., 2021

An impossible utopia in distance geometry.
CoRR, 2021

Solving the One-dimensional Distance Geometry Problem by Optical Computing.
CoRR, 2021

Improving the sampling process in the interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem.
Appl. Math. Comput., 2021

binMeta: A New Java Package for Meta-heuristic Searches.
Proceedings of the Large-Scale Scientific Computing - 13th International Conference, 2021

A Linear Program for Points of Interest Relocation in Adaptive Maps.
Proceedings of the Geometric Science of Information - 6th International Conference, 2021

On the Representation of Human Motions and Distance-based Retargeting.
Proceedings of the 16th Conference on Computer Science and Intelligence Systems, 2021

A study on the impact of the distance types involved in protein structure determination by NMR.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
An application-based characterization of dynamical distance geometry problems.
Optim. Lett., 2020

Preface: Special issue on distances in optimization and graphs dedicated to the memory of Michel Deza.
Optim. Lett., 2020

The K-discretization and K-incident graphs for discretizable Distance Geometry.
Optim. Lett., 2020

MD-jeep: a New Release for Discretizable Distance Geometry Problems with Interval Data.
Proceedings of the 2020 Federated Conference on Computer Science and Information Systems, 2020

An Analysis on the Degrees of Freedom of Binary Representations for Solutions to Discretizable Distance Geometry Problems.
Proceedings of the Recent Advances in Computational Optimization, 2020

2019
Systematic Exploration of Protein Conformational Space Using a Distance Geometry Approach.
J. Chem. Inf. Model., 2019

DSPP: Deep Shape and Pose Priors of Humans.
Proceedings of the Motion, Interaction and Games, 2019

A Coarse-Grained Representation for Discretizable Distance Geometry with Interval Data.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019

An Efficient Exhaustive Search for the Discretizable Distance Geometry Problem with Interval Data.
Proceedings of the 2019 Federated Conference on Computer Science and Information Systems, 2019

2018
A symmetry-based splitting strategy for discretizable distance geometry problems.
J. Glob. Optim., 2018

Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures.
Ann. Oper. Res., 2018

Surface based motion retargeting by preserving spatial relationship.
Proceedings of the 11th Annual International Conference on Motion, Interaction, and Games, 2018

Feature Selection in Time-Series Motion Databases.
Proceedings of the 2018 Federated Conference on Computer Science and Information Systems, 2018

On the Discretization of Distance Geometry: Theory, Algorithms and Applications.
, 2018

2017
Recent advances on the interval distance geometry problem.
J. Glob. Optim., 2017

Normalized Euclidean distance matrices for human motion retargeting.
Proceedings of the Tenth International Conference on Motion in Games, 2017

An Approach to Dynamical Distance Geometry.
Proceedings of the Geometric Science of Information - Third International Conference, 2017

A Distance-Based Approach for Human Posture Simulations.
Proceedings of the 2017 Federated Conference on Computer Science and Information Systems, 2017

2016
Optimal partial discretization orders for discretizable distance geometry.
Int. Trans. Oper. Res., 2016

Assigned and unassigned distance geometry: applications to biological molecules and nanostructures.
4OR, 2016

A New Approach to the Discretization of Multidimensional Scaling.
Proceedings of the 2016 Federated Conference on Computer Science and Information Systems, 2016

InterCriteria Analysis of Ant Algorithm with Environment Change for GPS Surveying Problem.
Proceedings of the Artificial Intelligence: Methodology, Systems, and Applications, 2016

2015
Preface.
Discret. Appl. Math., 2015

An algorithm to enumerate all possible protein conformations verifying a set of distance constraints.
BMC Bioinform., 2015

Optimal Discretization Orders for Distance Geometry: A Theoretical Standpoint.
Proceedings of the Large-Scale Scientific Computing - 10th International Conference, 2015

A Pseudo de Bruijn Graph Representation for Discretization Orders for Distance Geometry.
Proceedings of the Bioinformatics and Biomedical Engineering, 2015

Ant Colony Optimization with environment changes: An application to GPS surveying.
Proceedings of the 2015 Federated Conference on Computer Science and Information Systems, 2015

2014
BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex.
Trans. Comput. Sci., 2014

Euclidean Distance Geometry and Applications.
SIAM Rev., 2014

Discretization orders and efficient computation of cartesian coordinates for distance geometry.
Optim. Lett., 2014

Discretization orders for protein side chains.
J. Glob. Optim., 2014

On the number of realizations of certain Henneberg graphs arising in protein conformation.
Discret. Appl. Math., 2014

An adaptive branching scheme for the Branch & Prune algorithm applied to Distance Geometry.
Proceedings of the 2014 Federated Conference on Computer Science and Information Systems, 2014

2013
A VNS-Based Heuristic for Feature Selection in Data Mining.
Proceedings of the Hybrid Metaheuristics, 2013

The interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem with inexact distances.
J. Glob. Optim., 2013

The integration of Clifford Algebra in the iBP algorithm for the DMDGP.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

On the Identification of Discretization Orders for Distance Geometry with Intervals.
Proceedings of the Geometric Science of Information - First International Conference, 2013

Energy-based Pruning Devices for the BP Algorithm applied to Distance Geometry.
Proceedings of the 2013 Federated Conference on Computer Science and Information Systems, 2013

Distance Geometry in Structural Biology: New Perspectives.
Proceedings of the Distance Geometry: Theory, Methods, and Applications, 2013

The Discretizable Molecular Distance Geometry Problem seems Easier on Proteins.
Proceedings of the Distance Geometry: Theory, Methods, and Applications, 2013

2012
The discretizable distance geometry problem.
Optim. Lett., 2012

Discretization orders for distance geometry problems.
Optim. Lett., 2012

Exploiting Symmetry Properties of the Discretizable molecular Distance Geometry Problem.
J. Bioinform. Comput. Biol., 2012

Recent advances on the Discretizable Molecular Distance Geometry Problem.
Eur. J. Oper. Res., 2012

The discretizable molecular distance geometry problem.
Comput. Optim. Appl., 2012

A Parallel BP Algorithm for the Discretizable Distance Geometry Problem.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

On suitable orders for discretizing Molecular Distance Geometry Problems related to protein side chains.
Proceedings of the Federated Conference on Computer Science and Information Systems, 2012

2011
On the computation of protein backbones by using artificial backbones of hydrogens.
J. Glob. Optim., 2011

Molecular distance geometry methods: from continuous to discrete.
Int. Trans. Oper. Res., 2011

Polynomial cases of the Discretizable Molecular Distance Geometry Problem
CoRR, 2011

Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems.
Proceedings of the Experimental Algorithms - 10th International Symposium, 2011

Variable Neighborhood Search for Robust Optimization and Applications to Aerodynamics.
Proceedings of the Large-Scale Scientific Computing - 8th International Conference, 2011

Recent Developments in Data Mining and Agriculture.
Proceedings of the Advances in Data Mining. 11th Industrial Conference, 2011

Extending the definition of beta-consistent biclustering for feature selection.
Proceedings of the Federated Conference on Computer Science and Information Systems, 2011

Sparsifying Distance Matrices for Protein-Protein Structure Alignments.
Proceedings of the 10th Cologne-Twente Workshop on graphs and combinatorial optimization. Extended Abstracts, 2011

Branch-and-Prune trees with bounded width.
Proceedings of the 10th Cologne-Twente Workshop on graphs and combinatorial optimization. Extended Abstracts, 2011

On the Number of Solutions of the Discretizable Molecular Distance Geometry Problem.
Proceedings of the Combinatorial Optimization and Applications, 2011

A symmetry-driven BP algorithm for the Discretizable Molecular Distance Geometry Problem.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010
A New Heuristic for Feature Selection by Consistent Biclustering
CoRR, 2010

Consistent Biclustering and Applications to Agriculture.
Proceedings of the Advances in Data Mining. 10th Industrial Conference, 2010

MD-jeep: An Implementation of a Branch and Prune Algorithm for Distance Geometry Problems.
Proceedings of the Mathematical Software, 2010

On the solution of molecular distance geometry problems with interval data.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

A parallel version of the Branch & Prune algorithm for the Molecular Distance Geometry Problem.
Proceedings of the 8th ACS/IEEE International Conference on Computer Systems and Applications, 2010

2009
A survey of data mining techniques applied to agriculture.
Oper. Res., 2009

On a discretizable subclass of instances of the molecular distance geometry problem.
Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

Computing artificial backbones of hydrogen atoms in order to discover protein backbones.
Proceedings of the International Multiconference on Computer Science and Information Technology, 2009

Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem.
Proceedings of the Genetic and Evolutionary Computation Conference, 2009

The Molecular Distance Geometry Problem Applied to Protein Conformations.
Proceedings of the 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization, 2009

2008
Understanding the role of the topology in protein folding by computational inverse folding experiments.
Comput. Biol. Chem., 2008


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