Antonín Pavelka

According to our database, Antonín Pavelka authored at least 7 papers between 2009 and 2018.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2018

CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories.

Adam Jurcík, David Bednar, Jan Byska, Sérgio M. Marques, Katarína Furmanová, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonín Pavelka, Martin Manak, Jirí Damborský, Barbora Kozlíková

Bioinform., 2018

2017

MMTF - An efficient file format for the transmission, visualization, and analysis of macromolecular structures.

Anthony R. Bradley, Alexander S. Rose, Antonín Pavelka, Yana Valasatava, Jose M. Duarte, Andreas Prlic, Peter W. Rose

PLoS Comput. Biol., 2017

2016

CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules.

Antonín Pavelka, Eva Sebestova, Barbora Kozlíková, Jan Brezovsky, Jirí Sochor, Jirí Damborský

IEEE ACM Trans. Comput. Biol. Bioinform., 2016

2014

PredictSNP: Robust and Accurate Consensus Classifier for Prediction of Disease-Related Mutations.

Jaroslav Bendl, Jan Stourac, Ondrej Salanda, Antonín Pavelka, Eric D. Wieben, Jaroslav Zendulka, Jan Brezovsky, Jirí Damborský

PLoS Comput. Biol., 2014

CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures.

Barbora Kozlíková, Eva Sebestova, Vilém Sustr, Jan Brezovsky, Ondrej Strnad, Lukas Daniel, David Bednar, Antonín Pavelka, Martin Manak, Martin Bezdeka, Petr Benes, Matus Kotry, Artur Góra, Jirí Damborský, Jiri Sochor

Bioinform., 2014

2012

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures.

Eva Chovancová, Antonín Pavelka, Petr Benes, Ondrej Strnad, Jan Brezovsky, Barbora Kozlíková, Artur Góra, Vilém Sustr, Martin Klvana, Petr Medek, Lada Biedermannová, Jiri Sochor, Jirí Damborský

PLoS Comput. Biol., 2012

2009

HotSpot Wizard: a web server for identification of hot spots in protein engineering.

Antonín Pavelka, Eva Chovancová, Jirí Damborský

Nucleic Acids Res., 2009