Anton I. Korobeynikov

According to our database, Anton I. Korobeynikov authored at least 20 papers between 2009 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

MGnify: the microbiome sequence data analysis resource in 2023.

Lorna J. Richardson, Ben Allen, Germana Baldi, Martin Beracochea, Maxwell L. Bileschi, Tony Burdett, Josephine Burgin, Juan Caballero, Guy Cochrane, Lucy J. Colwell, Tom Curtis, Alejandra Escobar-Zepeda, Tatiana A. Gurbich, Varsha Kale, Anton I. Korobeynikov, Shriya Raj, Alexander B. Rogers, Ekaterina A. Sakharova, Santiago Sanchez, Darren J. Wilkinson, Robert D. Finn

Nucleic Acids Res., January, 2023

2021

coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies.

Dmitry Meleshko, Iman Hajirasouliha, Anton I. Korobeynikov

Bioinform., 2021

2020

MGnify: the microbiome analysis resource in 2020.

Alex L. Mitchell, Alexandre Almeida, Martin Beracochea, Miguel A. Boland, Josephine Burgin, Guy Cochrane, Michael R. Crusoe, Varsha Kale, Simon C. Potter, Lorna J. Richardson, Ekaterina A. Sakharova, Maxim Scheremetjew, Anton I. Korobeynikov, Alexander Shlemov, Olga Kunyavskaya, Alla L. Lapidus, Robert D. Finn

Nucleic Acids Res., 2020

Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.

Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus

BMC Bioinform., 2020

CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.

Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus

BMC Bioinform., 2020

SPAligner: alignment of long diverged molecular sequences to assembly graphs.

Tatiana Dvorkina, Dmitry Antipov, Anton I. Korobeynikov, Sergey Nurk

BMC Bioinform., 2020

2019

Sequence Analysis.

Andrey D. Prjibelski, Anton I. Korobeynikov, Alla L. Lapidus

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction.

Vasily Ershov, Artem Tarasov, Alla L. Lapidus, Anton I. Korobeynikov

J. Comput. Biol., 2019

PathRacer: Racing Profile HMM Paths on Assembly Graph.

Alexander Shlemov, Anton I. Korobeynikov

Proceedings of the Algorithms for Computational Biology - 6th International Conference, 2019

2017

Assessing the Significance of Peptide Spectrum Match Scores.

Anastasiia Abramova, Anton I. Korobeynikov

Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017

2016

hybridSPAdes: an algorithm for hybrid assembly of short and long reads.

Dmitry Antipov, Anton I. Korobeynikov, Jeffrey S. McLean, Pavel A. Pevzner

Bioinform., 2016

metaSPAdes: A New Versatile de novo Metagenomics Assembler.

Sergey Nurk, Dmitry Meleshko, Anton I. Korobeynikov, Pavel A. Pevzner

Proceedings of the Research in Computational Molecular Biology - 20th Annual Conference, 2016

2015

Assembling short reads from jumping libraries with large insert sizes.

Irina Vasilinetc, Andrey D. Prjibelski, Alexey A. Gurevich, Anton I. Korobeynikov, Pavel A. Pevzner

Bioinform., 2015

2014

Basic Singular Spectrum Analysis and forecasting with R.

Nina Golyandina, Anton I. Korobeynikov

Comput. Stat. Data Anal., 2014

ExSPAnder: a universal repeat resolver for DNA fragment assembly.

Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner

Bioinform., 2014

2013

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products.

Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner

J. Comput. Biol., 2013

BayesHammer: Bayesian clustering for error correction in single-cell sequencing.

Sergey I. Nikolenko, Anton I. Korobeynikov, Max A. Alekseyev

BMC Genom., 2013

Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads.

Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner

Proceedings of the Research in Computational Molecular Biology, 2013

2012

Consistency of Parametric MLE Under Mixed Case Interval Censoring.

Anton I. Korobeynikov

Commun. Stat. Simul. Comput., 2012

2009

Computation- and Space-Efficient Implementation of SSA.

Anton I. Korobeynikov

CoRR, 2009