Anthony J. Cox

According to our database, Anthony J. Cox authored at least 19 papers between 1999 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

A Class of Heuristics for Reducing the Number of BWT-Runs in the String Ordering Problem.

Gianmarco Bertola, Anthony J. Cox, Veronica Guerrini, Giovanna Rosone

Proceedings of the 35th Annual Symposium on Combinatorial Pattern Matching, 2024

2018

Canvas SPW: calling de novo copy number variants in pedigrees.

Sergii Ivakhno, Eric Roller, Camilla Colombo, Philip Tedder, Anthony J. Cox

Bioinform., 2018

2017

tHapMix: simulating tumour samples through haplotype mixtures.

Sergii Ivakhno, Camilla Colombo, Stephen Tanner, Philip Tedder, Stefano Berri, Anthony J. Cox

Bioinform., 2017

AKT: ancestry and kinship toolkit.

Rudy Arthur, Ole Schulz-Trieglaff, Anthony J. Cox, Jared O'Connell

Bioinform., 2017

2016

Lightweight LCP construction for very large collections of strings.

Anthony J. Cox, Fabio Garofalo, Giovanna Rosone, Marinella Sciortino

J. Discrete Algorithms, 2016

Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications.

Xiaoyu Chen, Ole Schulz-Trieglaff, Richard Shaw, Bret Barnes, Felix Schlesinger, Morten Källberg, Anthony J. Cox, Semyon Kruglyak, Christopher T. Saunders

Bioinform., 2016

Rapid genotype refinement for whole-genome sequencing data using multi-variate normal distributions.

Rudy Arthur, Jared O'Connell, Ole Schulz-Trieglaff, Anthony J. Cox

Bioinform., 2016

RLZAP: Relative Lempel-Ziv with Adaptive Pointers.

Anthony J. Cox, Andrea Farruggia, Travis Gagie, Simon J. Puglisi, Jouni Sirén

Proceedings of the String Processing and Information Retrieval, 2016

2015

NxTrim: optimized trimming of Illumina mate pair reads.

Jared O'Connell, Ole Schulz-Trieglaff, Emma Carlson, Matthew M. Hims, Niall A. Gormley, Anthony J. Cox

Bioinform., 2015

2014

BEETL-fastq: a searchable compressed archive for DNA reads.

Lilian Janin, Ole Schulz-Trieglaff, Anthony J. Cox

Bioinform., 2014

Adaptive reference-free compression of sequence quality scores.

Lilian Janin, Giovanna Rosone, Anthony J. Cox

Bioinform., 2014

2013

Lightweight algorithms for constructing and inverting the BWT of string collections.

Markus J. Bauer, Anthony J. Cox, Giovanna Rosone

Theor. Comput. Sci., 2013

metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences.

Christina Ander, Ole Schulz-Trieglaff, Jens Stoye, Anthony J. Cox

BMC Bioinform., 2013

2012

Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform.

Anthony J. Cox, Markus J. Bauer, Tobias Jakobi, Giovanna Rosone

Bioinform., 2012

Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes.

Anthony J. Cox, Tobias Jakobi, Giovanna Rosone, Ole Schulz-Trieglaff

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

Lightweight LCP Construction for Next-Generation Sequencing Datasets.

Markus J. Bauer, Anthony J. Cox, Giovanna Rosone, Marinella Sciortino

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

2011

Lightweight BWT Construction for Very Large String Collections.

Markus J. Bauer, Anthony J. Cox, Giovanna Rosone

Proceedings of the Combinatorial Pattern Matching - 22nd Annual Symposium, 2011

2010

CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data.

Sergii Ivakhno, Tom Royce, Anthony J. Cox, Dirk J. Evers, R. Keira Cheetham, Simon Tavaré

Bioinform., 2010

1999

Row-Wise Backward Stable Elimination Methods for the Equality Constrained Least Squares Problem.

Anthony J. Cox, Nicholas J. Higham

SIAM J. Matrix Anal. Appl., 1999