Anthony J. Bonner

According to our database, Anthony J. Bonner authored at least 57 papers between 1983 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2020

A density-based statistical analysis of graph clustering algorithm performance.

Pierre Miasnikof, Alexander Y. Shestopaloff, Anthony J. Bonner, Yuri A. Lawryshyn, Panos M. Pardalos, Ernesto Estrada

J. Complex Networks, 2020

2019

A Statistical Density-Based Analysis of Graph Clustering Algorithm Performance.

Pierre Miasnikof, Alexander Y. Shestopaloff, Anthony J. Bonner, Yuri A. Lawryshyn, Panos M. Pardalos

CoRR, 2019

2018

A Statistical Performance Analysis of Graph Clustering Algorithms.

Pierre Miasnikof, Alexander Y. Shestopaloff, Anthony J. Bonner, Yuri A. Lawryshyn

Proceedings of the Algorithms and Models for the Web Graph - 15th International Workshop, 2018

2014

Planning with Transaction Logic.

Reza Basseda, Michael Kifer, Anthony J. Bonner

Proceedings of the Web Reasoning and Rule Systems - 8th International Conference, 2014

2012

Finding MAPs using strongly equivalent high order recurrent symmetric connectionist networks.

Emad A. M. Andrews, Anthony J. Bonner

Cogn. Syst. Res., 2012

2011

Explaining Genetic Knock-Out Effects Using Cost-Based Abduction.

Emad A. M. Andrews, Anthony J. Bonner

Proceedings of the IJCAI 2011, 2011

2010

Deep Supervised t-Distributed Embedding.

Martin Renqiang Min, Laurens van der Maaten, Zineng Yuan, Anthony J. Bonner, Zhaolei Zhang

Proceedings of the 27th International Conference on Machine Learning (ICML-10), 2010

2009

Learned Random-Walk Kernels and Empirical-Map Kernels for Protein Sequence Classification.

Renqiang Min, Anthony J. Bonner, Jingjing Li, Zhaolei Zhang

J. Comput. Biol., 2009

A Probabilistic Framework to Improve microRNA Target Prediction by Incorporating Proteomics Data.

Jingjing Li, Martin Renqiang Min, Anthony J. Bonner, Zhaolei Zhang

J. Bioinform. Comput. Biol., 2009

Large-Margin kNN Classification Using a Deep Encoder Network

Martin Renqiang Min, David A. Stanley, Zineng Yuan, Anthony J. Bonner, Zhaolei Zhang

CoRR, 2009

Learning Random-Walk Kernels for Protein Remote Homology Identification and Motif Discovery.

Martin Renqiang Min, Rui Kuang, Anthony J. Bonner, Zhaolei Zhang

Proceedings of the SIAM International Conference on Data Mining, 2009

Finding MAPs Using High Order Recurrent Networks.

Emad A. M. Andrews, Anthony J. Bonner

Proceedings of the Neural Information Processing, 16th International Conference, 2009

A Deep Non-linear Feature Mapping for Large-Margin kNN Classification.

Martin Renqiang Min, David A. Stanley, Zineng Yuan, Anthony J. Bonner, Zhaolei Zhang

Proceedings of the ICDM 2009, 2009

2008

Neural networks approaches for discovering the learnable correlation between gene function and gene expression in mouse.

Emad A. M. Andrews, Quaid Morris, Anthony J. Bonner

Neurocomputing, 2008

2007

Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements.

Hui Lan, Rachel Carson, Nicholas J. Provart, Anthony J. Bonner

BMC Bioinform., 2007

Modifying kernels using label information improves SVM classification performance.

Martin Renqiang Min, Anthony J. Bonner, Zhaolei Zhang

Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007

2006

Towards the Prediction of Protein Abundance from Tandem Mass Spectrometry Data.

Anthony J. Bonner, Han Liu

Proceedings of the Sixth SIAM International Conference on Data Mining, 2006

Connectionist Approaches for Predicting Mouse Gene Function from Gene Expression.

Emad A. M. Andrews Shenouda, Quaid Morris, Anthony J. Bonner

Proceedings of the Neural Information Processing, 13th International Conference, 2006

2004

Clustering Labeled Data and Cross-Validation for Classification with Few Positives in Yeast.

Miles Trochesset, Anthony J. Bonner

Proceedings of the 4th ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2004), 2004

Comparison of discrimination methods for peptide classification in tandem mass spectrometry.

Anthony J. Bonner, Han Liu

Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2004

2001

Query Languages for Sequence Databases: Termination and Complexity.

Giansalvatore Mecca, Anthony J. Bonner

IEEE Trans. Knowl. Data Eng., 2001

Uniform integration of genome mapping data using intersection graphs.

Eric Harley, Anthony J. Bonner, Nathan Goodman

Bioinform., 2001

2000

Querying Sequence Databases with Transducers.

Anthony J. Bonner, Giansalvatore Mecca

Acta Informatica, 2000

1999

Revealing hidden interval graph structure in STS-content data.

Eric Harley, Anthony J. Bonner, Nathan Goodman

Bioinform., 1999

Workflow, Transactions, and Datalog.

Anthony J. Bonner

Proceedings of the Eighteenth ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, May 31, 1999

1998

Sequences, Datalog, and Transducers.

Anthony J. Bonner, Giansalvatore Mecca

J. Comput. Syst. Sci., 1998

Results on Reasoning about Updates in Transaction Logic.

Anthony J. Bonner, Michael Kifer

Proceedings of the Transactions and Change in Logic Databases, 1998

The State of Change: A Survey.

Anthony J. Bonner, Michael Kifer

Proceedings of the Transactions and Change in Logic Databases, 1998

A Logic for Programming Database Transactions.

Anthony J. Bonner, Michael Kifer

Proceedings of the Logics for Databases and Information Systems (the book grow out of the Dagstuhl Seminar 9529: Role of Logics in Information Systems, 1998

1997

A Logical Semantics for Hypothetical Rulebases with Deletion.

Anthony J. Bonner

J. Log. Program., 1997

Intuitionistic Deductive Databases and the Polynomial Time Hierarchy.

Anthony J. Bonner

J. Log. Program., 1997

Reusing and Modifying Rulebases by Predicate Substitution.

Anthony J. Bonner, Tomasz Imielinski

J. Comput. Syst. Sci., 1997

Workshop DYNAMICS 97: (Trans)Actions and Change in Logic Programming and Deductive Databases.

Anthony J. Bonner, Burkhard Freitag, Laura Giordano, Robert A. Kowalski

Proceedings of the Logic Programming, 1997

Querying String Databases with Transducers.

Anthony J. Bonner, Giansalvatore Mecca

Proceedings of the Database Programming Languages, 6th International Workshop, 1997

Modular Composition of Transaction Programs with Deductive Databases.

Anthony J. Bonner

Proceedings of the Database Programming Languages, 6th International Workshop, 1997

What Was Llull Up To?

Anthony J. Bonner

Proceedings of the Transformation-Based Reactive Systems Development, 1997

1996

Sequence Datalog: Declarative String Manipulation in Databases.

Anthony J. Bonner, Giansalvatore Mecca

Proceedings of the Logic in Databases, 1996

Good Maps Are Straight.

Eric Harley, Anthony J. Bonner, Nathan Goodman

Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

Concurrency and Communication in Transaction Logic.

Anthony J. Bonner, Michael Kifer

Proceedings of the Logic Programming, 1996

LabFlow-1: A Database Benchmark for High-Throughput Workflow Management.

Anthony J. Bonner, Adel Shrufi, Steve Rozen

Proceedings of the Advances in Database Technology, 1996

1995

Finite Query Languages for Sequence Databases.

Giansalvatore Mecca, Anthony J. Bonner

Proceedings of the Database Programming Languages (DBPL-5), 1995

1994

An Overview of Transaction Logic.

Anthony J. Bonner, Michael Kifer

Theor. Comput. Sci., 1994

A Flexible Approach to Genome Map Assembly.

Eric Harley, Anthony J. Bonner

Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994

Applications of Transaction Logic to Knowledge Representation.

Anthony J. Bonner, Michael Kifer

Proceedings of the Temporal Logic, First International Conference, 1994

1993

Transaction Logic Programming.

Anthony J. Bonner, Michael Kifer

Proceedings of the Logic Programming, 1993

Database Programming in Transaction Logic.

Anthony J. Bonner, Michael Kifer, Mariano P. Consens

Proceedings of the Database Programming Languages (DBPL-4), Proceedings of the Fourth International Workshop on Database Programming Languages - Object Models and Languages, Manhattan, New York City, USA, 30 August, 1993

1992

The Complexity of Reusing and Modifying Rulebases.

Anthony J. Bonner

Proceedings of the Eleventh ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, 1992

transaction Logic: An (Early) Exposé.

Anthony J. Bonner, Michael Kifer

Proceedings of the Formal Methods in Databases and Software Engineering, 1992

1991

Objects and Views.

Serge Abiteboul, Anthony J. Bonner

Proceedings of the 1991 ACM SIGMOD International Conference on Management of Data, 1991

1990

Hypothetical Datalog: Complexity and Expressibility.

Anthony J. Bonner

Theor. Comput. Sci., 1990

Adding Negation-as-Failure to Intuitionistic Logic Programming.

Anthony J. Bonner, L. Thorne McCarty

Proceedings of the Logic Programming, Proceedings of the 1990 North American Conference, Austin, Texas, USA, October 29, 1990

The Reuse and Modification of Rulebases by Predicate Substituation.

Anthony J. Bonner, Tomasz Imielinski

Proceedings of the Advances in Database Technology, 1990

1989

Expressing Database Queries with Intuitionistic Logic.

Anthony J. Bonner, L. Thorne McCarty, Kumar V. Vadaparty

Proceedings of the Logic Programming, 1989

Hypothetical Datalog: Negation and Linear Recursion.

Anthony J. Bonner

Proceedings of the Eighth ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, 1989

1988

Hypothetical Datalog: Complexity and Expressiblity.

Anthony J. Bonner

Proceedings of the ICDT'88, 2nd International Conference on Database Theory, Bruges, Belgium, August 31, 1988

A Logic for Hypothetical Reasoning.

Anthony J. Bonner

Proceedings of the 7th National Conference on Artificial Intelligence, 1988

1983

Machine analysis of acoustical signals.

Joseph N. Maksym, Anthony J. Bonner, C. Ann Dent, Gavin L. Hemphill

Pattern Recognit., 1983