Anne Shiu

According to our database, Anne Shiu authored at least 28 papers between 2006 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Absolute concentration robustness: Algebra and geometry.

Luis David García-Puente, Elizabeth Gross, Heather A. Harrington, Matthew D. Johnston, Nicolette Meshkat, Mercedes Pérez Millán, Anne Shiu

J. Symb. Comput., 2025

2024

On the connectedness of multistationarity regions of small reaction networks.

Allison McClure, Anne Shiu

J. Symb. Comput., 2024

2023

Prevalence of Multistationarity and Absolute Concentration Robustness in Reaction Networks.

Badal Joshi, Nidhi Kaihnsa, Tung D. Nguyen, Anne Shiu

SIAM J. Appl. Math., December, 2023

Wheels: A new criterion for non-convexity of neural codes.

Alexander Ruys de Perez, Laura Felicia Matusevich, Anne Shiu

Adv. Appl. Math., September, 2023

Nondegenerate Neural Codes and Obstructions to Closed-Convexity.

Patrick Chan, Katherine Johnston, Joseph Lent, Alexander Ruys de Perez, Anne Shiu

SIAM J. Discret. Math., March, 2023

Identifiability of linear compartmental tree models and a general formula for input-output equations.

Cashous Bortner, Elizabeth Gross, Nicolette Meshkat, Anne Shiu, Seth Sullivant

Adv. Appl. Math., 2023

2022

Identifiability of linear compartmental models: The singular locus.

Elizabeth Gross, Nicolette Meshkat, Anne Shiu

Adv. Appl. Math., 2022

2020

Neural codes and the factor complex.

Alexander Ruys de Perez, Laura Felicia Matusevich, Anne Shiu

Adv. Appl. Math., 2020

2019

Linear Compartmental Models: Input-Output Equations and Operations That Preserve Identifiability.

Elizabeth Gross, Heather A. Harrington, Nicolette Meshkat, Anne Shiu

SIAM J. Appl. Math., 2019

Neural Codes, Decidability, and a New Local Obstruction to Convexity.

Aaron Chen, Florian Frick, Anne Shiu

SIAM J. Appl. Algebra Geom., 2019

2018

Gröbner bases of neural ideals.

Rebecca Garcia, Luis David García-Puente, Ryan Kruse, Jessica Liu, Dane Miyata, Ethan Petersen, Kaitlyn Phillipson, Anne Shiu

Int. J. Algebra Comput., 2018

Algebraic signatures of convex and non-convex codes.

Carina Curto, Elizabeth Gross, Jack Jeffries, Katherine Morrison, Zvi Rosen, Anne Shiu, Nora Youngs

CoRR, 2018

2017

Which Small Reaction Networks Are Multistationary?

Badal Joshi, Anne Shiu

SIAM J. Appl. Dyn. Syst., 2017

What Makes a Neural Code Convex?

Carina Curto, Elizabeth Gross, Jack Jeffries, Katherine Morrison, Mohamed Omar, Zvi Rosen, Anne Shiu, Nora Youngs

SIAM J. Appl. Algebra Geom., 2017

Obstructions to convexity in neural codes.

Caitlin Lienkaemper, Anne Shiu, Zev Woodstock

Adv. Appl. Math., 2017

2016

Sign Conditions for Injectivity of Generalized Polynomial Maps with Applications to Chemical Reaction Networks and Real Algebraic Geometry.

Stefan Müller, Elisenda Feliu, Georg Regensburger, Carsten Conradi, Anne Shiu, Alicia Dickenstein

Found. Comput. Math., 2016

Analyzing multistationarity in chemical reaction networks using the determinant optimization method.

Bryan Félix, Anne Shiu, Zev Woodstock

Appl. Math. Comput., 2016

2014

A Geometric Approach to the Global Attractor Conjecture.

Manoj Gopalkrishnan, Ezra Miller, Anne Shiu

SIAM J. Appl. Dyn. Syst., 2014

2012

Simplifying the Jacobian Criterion for Precluding Multistationarity in Chemical Reaction Networks.

Badal Joshi, Anne Shiu

SIAM J. Appl. Math., 2012

Symbolic Methods for Chemical Reaction Networks (Dagstuhl Seminar 12462).

François Boulier, Anne Shiu, Thomas Sturm, Andreas Weber

Dagstuhl Reports, 2012

A projection argument for differential inclusions, with applications to persistence of mass-action kinetics

Manoj Gopalkrishnan, Ezra Miller, Anne Shiu

CoRR, 2012

2010

Algebraic methods for biochemical reaction network theory.

Anne Shiu

PhD thesis, 2010

The Dynamics of Weakly Reversible Population Processes near Facets.

David F. Anderson, Anne Shiu

SIAM J. Appl. Math., 2010

2009

Convex Rank Tests and Semigraphoids.

Jason Morton, Lior Pachter, Anne Shiu, Bernd Sturmfels, Oliver Wienand

SIAM J. Discret. Math., 2009

Toric dynamical systems.

Gheorghe Craciun, Alicia Dickenstein, Anne Shiu, Bernd Sturmfels

J. Symb. Comput., 2009

2008

Three Counter-Examples on Semi-Graphoids.

Raymond Hemmecke, Jason Morton, Anne Shiu, Bernd Sturmfels, Oliver Wienand

Comb. Probab. Comput., 2008

The Smallest Multistationary Mass-Preserving Chemical Reaction Network.

Anne Shiu

Proceedings of the Algebraic Biology, Third International Conference, 2008

2006

Geometry of rank tests.

Jason Morton, Lior Pachter, Anne Shiu, Bernd Sturmfels, Oliver Wienand

Proceedings of the Third European Workshop on Probabilistic Graphical Models, 2006