Anne-Florence Bitbol

According to our database, Anne-Florence Bitbol authored at least 13 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2024

Impact of phylogeny on the inference of functional sectors from protein sequence data.

Nicola Dietler, Alia Abbara, Subham Choudhury, Anne-Florence Bitbol

PLoS Comput. Biol., 2024

Mutant fate in spatially structured populations on graphs: Connecting models to experiments.

Alia Abbara, Lisa Pagani, Celia García-Pareja, Anne-Florence Bitbol

PLoS Comput. Biol., 2024

Could ChatGPT get an Engineering Degree? Evaluating Higher Education Vulnerability to AI Assistants.

Beatriz Borges, Negar Foroutan, Deniz Bayazit, Anna Sotnikova, Syrielle Montariol, Tanya Nazaretzky, Mohammadreza Banaei, Alireza Sakhaeirad, Philippe Servant, Seyed Parsa Neshaei, Jibril Frej, Angelika Romanou, Gail Weiss, Sepideh Mamooler, Zeming Chen, Simin Fan, Silin Gao, Mete Ismayilzada, Debjit Paul, Alexandre Schöpfer, Andrej Janchevski, Anja Tiede, Clarence Linden, Emanuele Troiani, Francesco Salvi, Freya Behrens, Giacomo Orsi, Giovanni Piccioli, Hadrien Sevel, Louis Coulon, Manuela Pineros-Rodriguez, Marin Bonnassies, Pierre Hellich, Puck van Gerwen, Sankalp Gambhir, Solal Pirelli, Thomas Blanchard, Timothée Callens, Toni Abi Aoun, Yannick Calvino Alonso, Yuri Cho, Alberto Silvio Chiappa, Antonio Sclocchi, Étienne Bruno, Florian Hofhammer, Gabriel Pescia, Geovani Rizk, Leello Dadi, Lucas Stoffl, Manoel Horta Ribeiro, Matthieu Bovel, Yueyang Pan, Aleksandra Radenovic, Alexandre Alahi, Alexander Mathis, Anne-Florence Bitbol, Boi Faltings, Cécile Hébert, Devis Tuia, François Maréchal, George Candea, Giuseppe Carleo, Jean-Cédric Chappelier, Nicolas Flammarion, Jean-Marie Fürbringer, Jean-Philippe Pellet, Karl Aberer, Lenka Zdeborová, Marcel Salathé, Martin Jaggi, Martin Rajman, Mathias Payer, Matthieu Wyart, Michael Gastpar, Michele Ceriotti, Ola Svensson, Olivier Lévêque, Paolo Ienne, Rachid Guerraoui, Robert West, Sanidhya Kashyap, Valerio Piazza, Viesturs Simanis, Viktor Kuncak, Volkan Cevher, Philippe Schwaller, Sacha Friedli, Patrick Jermann, Tanja Käser, Antoine Bosselut

CoRR, 2024

2023

Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins.

Carlos A. Gandarilla-Pérez, Sergio Pinilla, Anne-Florence Bitbol, Martin Weigt

PLoS Comput. Biol., March, 2023

Pairing interacting protein sequences using masked language modeling.

Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol

CoRR, 2023

2022

Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences.

Andonis Gerardos, Nicola Dietler, Anne-Florence Bitbol

PLoS Comput. Biol., 2022

Generative power of a protein language model trained on multiple sequence alignments.

Damiano Sgarbossa, Umberto Lupo, Anne-Florence Bitbol

CoRR, 2022

Protein language models trained on multiple sequence alignments learn phylogenetic relationships.

Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol

CoRR, 2022

2020

Resist or perish: Fate of a microbial population subjected to a periodic presence of antimicrobial.

Loïc Marrec, Anne-Florence Bitbol

PLoS Comput. Biol., 2020

2019

Revealing evolutionary constraints on proteins through sequence analysis.

Shou-Wen Wang, Anne-Florence Bitbol, Ned S. Wingreen

PLoS Comput. Biol., 2019

Phylogenetic correlations can suffice to infer protein partners from sequences.

Guillaume Marmier, Martin Weigt, Anne-Florence Bitbol

PLoS Comput. Biol., 2019

2018

Inferring interaction partners from protein sequences using mutual information.

Anne-Florence Bitbol

PLoS Comput. Biol., 2018

2014

Quantifying the Role of Population Subdivision in Evolution on Rugged Fitness Landscapes.

Anne-Florence Bitbol, David J. Schwab

PLoS Comput. Biol., 2014