Anne Bergeron

According to our database, Anne Bergeron authored at least 51 papers between 1992 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Two Strikes Against the Phage Recombination Problem.

Manuel Lafond, Anne Bergeron, Krister M. Swenson

Proceedings of the Comparative Genomics - 20th International Conference, 2023

2022

On the Comparison of Bacteriophage Populations.

Anne Bergeron, Marie-Jean Meurs, Romy Valiquette-Labonté, Krister M. Swenson

Proceedings of the Comparative Genomics - 19th International Conference, 2022

2016

Aligning the unalignable: bacteriophage whole genome alignments.

Sèverine Bérard, Annie Chateau, Nicolas Pompidor, Paul Guertin, Anne Bergeron, Krister M. Swenson

BMC Bioinform., 2016

2015

Reconstructing the history of a WD40 beta-propeller tandem repeat using a phylogenetically informed algorithm.

Philippe Lavoie-Mongrain, Mahdi Belcaid, Aïda Ouangraoua, Anne Bergeron, Guylaine Poisson

PeerJ Comput. Sci., 2015

2013

Reconstructing the modular recombination history of Staphylococcus aureus phages.

Krister M. Swenson, Paul Guertin, Hugo Deschênes, Anne Bergeron

BMC Bioinform., 2013

The Genesis of the DCJ Formula.

Anne Bergeron, Jens Stoye

Proceedings of the Models and Algorithms for Genome Evolution, 2013

2012

On the Comparison of Sets of Alternative Transcripts.

Aïda Ouangraoua, Krister M. Swenson, Anne Bergeron

Proceedings of the Bioinformatics Research and Applications - 8th International Symposium, 2012

2011

Theory and Practice of Ultra-Perfection.

Aïda Ouangraoua, Anne Bergeron, Krister M. Swenson

J. Comput. Biol., 2011

The evolution of the tape measure protein: units, duplications and losses.

Mahdi Belcaid, Anne Bergeron, Guylaine Poisson

BMC Bioinform., 2011

2010

Combinatorial Structure of Genome Rearrangements Scenarios.

Aïda Ouangraoua, Anne Bergeron

J. Comput. Biol., 2010

Rearrangement Models and Single-Cut Operations.

Anne Bergeron, Paul Medvedev, Jens Stoye

J. Comput. Biol., 2010

Mosaic Graphs and Comparative Genomics in Phage Communities.

Mahdi Belcaid, Anne Bergeron, Guylaine Poisson

J. Comput. Biol., 2010

Ultra-Perfect Sorting Scenarios.

Aïda Ouangraoua, Anne Bergeron, Krister M. Swenson

Proceedings of the Comparative Genomics - International Workshop, 2010

2009

A new linear time algorithm to compute the genomic distance via the double cut and join distance.

Anne Bergeron, Julia Mixtacki, Jens Stoye

Theor. Comput. Sci., 2009

Comparative Genomics and Extensive Recombinations in Phage Communities.

Guylaine Poisson, Mahdi Belcaid, Anne Bergeron

Proceedings of the Comparative Genomics, International Workshop, 2009

Parking Functions, Labeled Trees and DCJ Sorting Scenarios.

Aïda Ouangraoua, Anne Bergeron

Proceedings of the Comparative Genomics, International Workshop, 2009

2008

Computing Common Intervals of K Permutations, with Applications to Modular Decomposition of Graphs.

Anne Bergeron, Cédric Chauve, Fabien de Montgolfier, Mathieu Raffinot

SIAM J. Discret. Math., 2008

Exact Transcriptome Reconstruction from Short Sequence Reads.

Vincent Lacroix, Michael Sammeth, Roderic Guigó, Anne Bergeron

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios.

Anne Bergeron, Julia Mixtacki, Jens Stoye

Proceedings of the Comparative Genomics, International Workshop, 2008

HP Distance Via Double Cut and Join Distance.

Anne Bergeron, Julia Mixtacki, Jens Stoye

Proceedings of the Combinatorial Pattern Matching, 19th Annual Symposium, 2008

2007

Perfect Sorting by Reversals Is Not Always Difficult.

Sèverine Bérard, Anne Bergeron, Cédric Chauve, Christophe Paul

IEEE ACM Trans. Comput. Biol. Bioinform., 2007

FragAnchor: A Large-Scale Predictor of Glycosylphosphatidylinositol Anchors in Eukaryote Protein Sequences by Qualitative Scoring.

Guylaine Poisson, Cédric Chauve, Xin Chen, Anne Bergeron

Genom. Proteom. Bioinform., 2007

Advances on sorting by reversals.

Eric Tannier, Anne Bergeron, Marie-France Sagot

Discret. Appl. Math., 2007

Exploring Genome Rearrangements using Virtual Hybridization.

Mahdi Belcaid, Anne Bergeron, Annie Chateau, Cédric Chauve, Yannick Gingras, Guylaine Poisson, M. Vendette

Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

The inversion distance problem.

Anne Bergeron, Julia Mixtacki, Jens Stoye

Proceedings of the Mathematics of Evolution and Phylogeny., 2007

2006

On the Similarity of Sets of Permutations and Its Applications to Genome Comparison.

Anne Bergeron, Jens Stoye

J. Comput. Biol., 2006

On Sorting by Translocations.

Anne Bergeron, Julia Mixtacki, Jens Stoye

J. Comput. Biol., 2006

A Unifying View of Genome Rearrangements.

Anne Bergeron, Julia Mixtacki, Jens Stoye

Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

2005

A very elementary presentation of the Hannenhalli-Pevzner theory.

Anne Bergeron

Discret. Appl. Math., 2005

Computing Common Intervals of <i>K</i> Permutations, with Applications to Modular Decomposition of Graphs.

Anne Bergeron, Cédric Chauve, Fabien de Montgolfier, Mathieu Raffinot

Proceedings of the Algorithms, 2005

2004

From cascade decompositions to bit-vector algorithms.

Anne Bergeron, Sylvie Hamel

Theor. Comput. Sci., 2004

An algorithmic view of gene teams.

Marie-Pierre Béal, Anne Bergeron, Sylvie Corteel, Mathieu Raffinot

Theor. Comput. Sci., 2004

Reconstructing Ancestral Gene Orders Using Conserved Intervals.

Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cédric Chauve

Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004

Conservation of Combinatorial Structures in Evolution Scenarios.

Sèverine Bérard, Anne Bergeron, Cédric Chauve

Proceedings of the Comparative Genomics, 2004

Reversal Distance without Hurdles and Fortresses.

Anne Bergeron, Julia Mixtacki, Jens Stoye

Proceedings of the Combinatorial Pattern Matching, 15th Annual Symposium, 2004

2003

Gene teams: a new formalization of gene clusters for comparative genomics.

Nicolas Luc, Jean-Loup Risler, Anne Bergeron, Mathieu Raffinot

Comput. Biol. Chem., 2003

2002

Vector Algorithms for Approximate String Matching.

Anne Bergeron, Sylvie Hamel

Int. J. Found. Comput. Sci., 2002

The Algorithmic of Gene Teams.

Anne Bergeron, Sylvie Corteel, Mathieu Raffinot

Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

Common intervals and sorting by reversals: a marriage of necessity.

Anne Bergeron, Steffen Heber, Jens Stoye

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001

Cascade Decompositions are Bit-Vector Algorithms.

Anne Bergeron, Sylvie Hamel

Proceedings of the Implementation and Application of Automata, 2001

Experiments in Computing Sequences of Reversals.

Anne Bergeron, François Strasbourg

Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001

2000

Fast Implementations of Automata Computations.

Anne Bergeron, Sylvie Hamel

Proceedings of the Implementation and Application of Automata, 2000

1999

Analysis of Reactive Systems with n Timers.

Anne Bergeron, Riccardo Catalano

Proceedings of the Automata Implementation, 1999

An Automated Analysis of Ping-Pong Interactions in E-mail Services.

Anne Bergeron, Jean-Christophe Manzoni

Proceedings of the Tools and Algorithms for Construction and Analysis of Systems, 1999

1998

The Death factors: a combinatorial analysis.

Anne Bergeron, Paul Geanta, Dominique Bergeron

Silico Biol., 1998

Automata and Computational Probabilities.

Marie-Chantal Beaulieu, Anne Bergeron

Proceedings of the Automata Implementation, 1998

1997

On the Rational Behaviors of Concurrent Timers.

Anne Bergeron

Theor. Comput. Sci., 1997

1995

Sharing Out Control in Distributed Processes.

Anne Bergeron

Theor. Comput. Sci., 1995

Symbolic Timing Devices.

Anne Bergeron

Proceedings of the Algebraic Methodology and Software Technology, 1995

1993

A Unified Approach to Control Problems in Discrete Event Processes.

Anne Bergeron

RAIRO Theor. Informatics Appl., 1993

1992

Assisted Mathematics: The Case of Discrete Probabilities.

Anne Bergeron

Proceedings of the Intelligent Tutoring Systems, Second International Conference, 1992