Anna R. Panchenko

According to our database, Anna R. Panchenko authored at least 25 papers between 2002 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

Finding driver mutations in cancer: Elucidating the role of background mutational processes.

Anna-Leigh Brown, Minghui Li, Alexander Goncearenco, Anna R. Panchenko

PLoS Comput. Biol., 2019

2018

Mutational signatures and mutable motifs in cancer genomes.

Igor B. Rogozin, Youri I. Pavlov, Alexander Goncearenco, Subhajyoti De, Artem G. Lada, Eugenia Poliakov, Anna R. Panchenko, David N. Cooper

Briefings Bioinform., 2018

2017

Exploring background mutational processes to decipher cancer genetic heterogeneity.

Alexander Goncearenco, Stephanie L. Rager, Minghui Li, Qing-Xiang Sang, Igor B. Rogozin, Anna R. Panchenko

Nucleic Acids Res., 2017

2016

MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions.

Minghui Li, Franco L. Simonetti, Alexander Goncearenco, Anna R. Panchenko

Nucleic Acids Res., 2016

HistoneDB 2.0: a histone database with variants - an integrated resource to explore histones and their variants.

Eli J. Draizen, Alexey K. Shaytan, Leonardo Mariño-Ramírez, Paul B. Talbert, David Landsman, Anna R. Panchenko

Database J. Biol. Databases Curation, 2016

2012

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins.

Benjamin A. Shoemaker, Dachuan Zhang, Manoj Tyagi, Ratna R. Thangudu, Jessica H. Fong, Aron Marchler-Bauer, Stephen H. Bryant, Thomas Madej, Anna R. Panchenko

Nucleic Acids Res., 2012

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Sergey Krasnov, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye

Nucleic Acids Res., 2012

MMDB: 3D structures and macromolecular interactions.

Thomas Madej, Kenneth J. Addess, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, Christopher J. Lanczycki, Chunlei Liu, Shennan Lu, Aron Marchler-Bauer, Anna R. Panchenko, Jie Chen, Paul A. Thiessen, Yanli Wang, Dachuan Zhang, Stephen H. Bryant

Nucleic Acids Res., 2012

SPEER-SERVER: a web server for prediction of protein specificity determining sites.

Abhijit Chakraborty, Sapan Mandloi, Christopher J. Lanczycki, Anna R. Panchenko, Saikat Chakrabarti

Nucleic Acids Res., 2012

2011

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye

Nucleic Acids Res., 2011

2010

Inferred Biomolecular Interaction Server - a web server to analyze and predict protein interacting partners and binding sites.

Benjamin A. Shoemaker, Dachuan Zhang, Ratna R. Thangudu, Manoj Tyagi, Jessica H. Fong, Aron Marchler-Bauer, Stephen H. Bryant, Tom Madej, Anna R. Panchenko

Nucleic Acids Res., 2010

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye

Nucleic Acids Res., 2010

ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder.

Michail Yu. Lobanov, Benjamin A. Shoemaker, Sergiy O. Garbuzynskiy, Jessica H. Fong, Anna R. Panchenko, Oxana V. Galzitskaya

Nucleic Acids Res., 2010

Knowledge-based annotation of small molecule binding sites in proteins.

Ratna R. Thangudu, Manoj Tyagi, Benjamin A. Shoemaker, Stephen H. Bryant, Anna R. Panchenko, Thomas Madej

BMC Bioinform., 2010

2009

Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis.

Jessica H. Fong, Benjamin A. Shoemaker, Sergiy O. Garbuzynskiy, Michail Yu. Lobanov, Oxana V. Galzitskaya, Anna R. Panchenko

PLoS Comput. Biol., 2009

Ensemble approach to predict specificity determinants: benchmarking and validation.

Saikat Chakrabarti, Anna R. Panchenko

BMC Bioinform., 2009

2008

Handling Diverse Protein Interaction Data: Integration, Storage and Retrieval.

Benjamin A. Shoemaker, Anna R. Panchenko

Proceedings of the Protein-protein Interactions and Networks: Identification, 2008

2007

Deciphering Protein-Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners.

Benjamin A. Shoemaker, Anna R. Panchenko

PLoS Comput. Biol., 2007

Deciphering Protein-Protein Interactions. Part I. Experimental Techniques and Databases.

Benjamin A. Shoemaker, Anna R. Panchenko

PLoS Comput. Biol., 2007

2006

State of the art: refinement of multiple sequence alignments.

Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant

BMC Bioinform., 2006

2005

A structure-based method for protein sequence alignment.

Maricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Alejandro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant

Bioinform., 2005

2003

CDD: a curated Entrez database of conserved domain alignments.

Aron Marchler-Bauer, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Anna R. Panchenko, Bachoti S. Rao, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant

Nucleic Acids Res., 2003

MMDB: Entrez's 3D-structure database.

Jie Chen, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Aron Marchler-Bauer, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Bachoti S. Rao, Anna R. Panchenko, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant

Nucleic Acids Res., 2003

2002

MMDB: Entrez's 3D-structure database.

Yanli Wang, John B. Anderson, Jie Chen, Lewis Y. Geer, Siqian He, David I. Hurwitz, Cynthia A. Liebert, Thomas Madej, Gabriele H. Marchler, Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Stephen H. Bryant

Nucleic Acids Res., 2002

CDD: a database of conserved domain alignments with links to domain three-dimensional structure.

Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, Paul A. Thiessen, Lewis Y. Geer, Stephen H. Bryant

Nucleic Acids Res., 2002