Anna Maria Masci

According to our database, Anna Maria Masci authored at least 20 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis.

Jie Zheng, Xingxian Li, Anna Maria Masci, Hayleigh Kahn, Anthony Huffman, Eliyas Asfaw, Yuanyi Pan, Jinjing Guo, Virginia He, Justin Song, Andrey I. Seleznev, Asiyah Yu Lin, Yongqun He

J. Biomed. Semant., December, 2024

Ontological representation, modeling, and analysis of parasite vaccines.

Anthony Huffman, Xumeng Zhang, Meghana Lanka, Jie Zheng, Anna Maria Masci, Yongqun He

J. Biomed. Semant., December, 2024

2023

Ontology-based Representation and Analysis of Conditional Vaccine Immune Responses Using Omics Data.

Anthony Huffman, Edison Ong, Timothy Brunson, Nasim Sanati, Jie Zheng, Anna Maria Masci, Guanming Wu, Yongqun He

Proceedings of the International Conference on Biomedical Ontologies 2023 together with the Workshop on Ontologies for Infectious and Immune-Mediated Disease Data Science (OIIDDS 2023) and the FAIR Ontology Harmonization and TRUST Data Interoperability Workshop (FOHTI 2023), Brasília, Brazil, August 28, 2023

2022

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.

Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith

J. Biomed. Semant., 2022

Environmental Health Language Collaborative (EHLC): a Route to Environmental Health Science Data Harmonization.

Anna Maria Masci, Stephanie Holmgren, Charles Schmitt, Rima Habre, Anne E. Thessen, Rebecca Boyles, Carmen J. Marsit

Proceedings of the International Conference on Biomedical Ontology 2022 (ICBO), Ann Arbor, Michigan, USA, September 25, 2022

2021

Ontology-guided segmentation and object identification for developmental mouse lung immunofluorescent images.

Anna Maria Masci, Scott White, Ben Neely, Maryanne Ardini-Polaske, Carol B. Hill, Ravi S. Misra, Bruce J. Aronow, Nathan Gaddis, Lina Yang, Susan E. Wert, Scott M. Palmer, Cliburn Chan

BMC Bioinform., 2021

CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature.

Anthony Huffman, Anna Maria Masci, Jie Zheng, Nasim Sanati, Timothy Brunson, Guanming Wu, Yongqun He

J. Biomed. Semant., 2021

2019

OHMI: the ontology of host-microbiome interactions.

Yongqun He, Haihe Wang, Jie Zheng, Daniel P. Beiting, Anna Maria Masci, Hong Yu, Kaiyong Liu, Jianmin Wu, Jeffrey L. Curtis, Barry Smith, Alexander V. Alekseyenko, Jihad S. Obeid

J. Biomed. Semant., 2019

Alignment of the Ontology of Host-Microbiome Interactions (OHMI) High Level Terms with Existing OBO Ontologies.

Yongqun He, Jie Zheng, Anna Maria Masci, Jihad S. Obeid

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

2018

Standardization of the Histopathology Cancer Report: An Ontological Approach.

Anna Maria Masci, Shannon McCall, Alessandro Racioppi, Helena Judge Ellis, Jihad S. Obeid, Barry Smith, Christian J. Stoeckert Jr., Jie Zheng

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2016

The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis.

Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Yu Lin, Alfred O. Hero III, Barry Smith, Yongqun He

J. Biomed. Semant., 2016

OBIB-a novel ontology for biobanking.

Mathias Brochhausen, Jie Zheng, David L. Birtwell, Heather Williams, Anna Maria Masci, Helena Judge Ellis, Christian J. Stoeckert Jr.

J. Biomed. Semant., 2016

2014

Protein Ontology: a controlled structured network of protein entities.

Darren A. Natale, Cecilia N. Arighi, Judith A. Blake, Carol J. Bult, Karen R. Christie, Julie Cowart, Peter D'Eustachio, Alexander D. Diehl, Harold J. Drabkin, Olivia Helfer, Hongzhan Huang, Anna Maria Masci, Jia Ren, Natalia V. Roberts, Karen Ross, Alan Ruttenberg, Veronica Shamovsky, Barry Smith, Meher Shruti Yerramalla, Jian Zhang, Aisha AlJanahi, Irem Çelen, Cynthia Gan, Mengxi Lv, Emily Schuster-Lezell, Cathy H. Wu

Nucleic Acids Res., 2014

OBCS: The Ontology of Biological and Clinical Statistics.

Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Yu Lin, Alfred O. Hero III, Barry Smith, Yongqun He

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

2011

Hematopoietic cell types: Prototype for a revised cell ontology.

Alexander D. Diehl, Alison Deckhut Augustine, Judith A. Blake, Lindsay G. Cowell, Elizabeth S. Gold, Timothy A. Gondré-Lewis, Anna Maria Masci, Terrence F. Meehan, Penelope A. Morel, Anastasia Nijnik, Bjoern Peters, Bali Pulendran, Richard H. Scheuermann, Q. Alison Yao, Martin S. Zand, Christopher J. Mungall

J. Biomed. Informatics, 2011

Logical Development of the Cell Ontology.

Terrence F. Meehan, Anna Maria Masci, Amina Abdulla, Lindsay G. Cowell, Judith A. Blake, Christopher J. Mungall, Alexander D. Diehl

BMC Bioinform., 2011

Bridging Multiple Ontologies: Representation of the Liver Immune Response.

Anna Maria Masci, Jeffrey Roach, Bernard de Bono, Pierre Grenon, Lindsay G. Cowell

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Connecting Ontologies for the Representation of Biological Pathways.

Anna Maria Masci, Mikhail K. Levin, Alan Ruttenberg, Lindsay G. Cowell

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

<i>owl_cpp</i>, a C++ Library for Working with OWL Ontologies.

Mikhail K. Levin, Alan Ruttenberg, Anna Maria Masci, Lindsay G. Cowell

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2009

An improved ontological representation of dendritic cells as a paradigm for all cell types.

Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Lieberman, Chris Mungall, Richard H. Scheuermann, Barry Smith, Lindsay G. Cowell

BMC Bioinform., 2009