Anna M. Ritz

Orcid: 0000-0002-7925-5369

Affiliations:
  • Reed College, Portland, OR, USA


According to our database1, Anna M. Ritz authored at least 42 papers between 2006 and 2024.

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Bibliography

2024
Simplifying Signaling Pathway Reconstruction with Containerized Random Walk Algorithms.
Proceedings of the 55th ACM Technical Symposium on Computer Science Education, 2024

2023
Growing Directed Acyclic Graphs: Optimization Functions for Pathway Reconstruction Algorithms.
J. Comput. Biol., July, 2023

<i>Special Issue</i> Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC) Workshop (2022).
J. Comput. Biol., July, 2023

Transformer Neural Networks for Protein Family and Interaction Prediction Tasks.
J. Comput. Biol., 2023

2022
FiT: fiber-based tensor completion for drug repurposing.
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

2021
Ten simple rules for attending your first conference.
PLoS Comput. Biol., 2021

Graphery: interactive tutorials for biological network algorithms.
Nucleic Acids Res., 2021

2020
MsPAC: a tool for haplotype-phased structural variant detection.
Bioinform., 2020

Distance measures for tumor evolutionary trees.
Bioinform., 2020

Lowering the Barrier for Undergraduates to Learn about Computational Research through a Course-Based Conference Experience.
Proceedings of the Research on Equity and Sustained Participation in Engineering, 2020

Prefix/Suffix Variation in Retinoic Acid Response Elements.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

Graphery: a Biological Network Algorithm Tutorial Webservice.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

Augmenting Signaling Pathway Reconstructions.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

A Protein-Protein Interactome for an African Cichlid.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

2019
Improved Differentially Private Analysis of Variance.
Proc. Priv. Enhancing Technol., 2019

Hypergraph-based connectivity measures for signaling pathway topologies.
PLoS Comput. Biol., 2019

Integrating protein localization with automated signaling pathway reconstruction.
BMC Bioinform., 2019

Network-based prediction of polygenic disease genes involved in cell motility.
BMC Bioinform., 2019

Factors Affecting Network-Based Gene Prediction Across Diverse Diseases.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Modeling Phytoplankton Movement and Fitness in Lakes.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018
Programming the Central Dogma: An Integrated Unit on Computer Science and Molecular Biology Concepts.
Proceedings of the 49th ACM Technical Symposium on Computer Science Education, 2018

Differentially Private ANOVA Testing.
Proceedings of the 1st International Conference on Data Intelligence and Security, 2018

Network-Based Prediction of Polygenic Disease Genes Involved in Cell Motility: Extended Abstract.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017
Pathway Analysis with Signaling Hypergraphs.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

GraphSpace: stimulating interdisciplinary collaborations in network biology.
Bioinform., 2017

Breaking Ties in Weighted Interactomes.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016
Modeling Cell Signaling Networks with Prize-Collecting Subhypernetworks.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

Copy Number Variation and Adaptive Evolutionary Radiations across the African Cichlid phylogeny.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

Reconstructing Neuronal Signaling Pathways With the Potential for Disruption in Schizophrenia.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2014
Characterization of structural variants with single molecule and hybrid sequencing approaches.
Bioinform., 2014

Pathway analysis with signaling hypergraphs.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

GraphSpace: sharing and collaborating through networks on the web.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
Algorithms for Identifying Structural Variants in Human Genomes.
PhD thesis, 2013

2012
Reconstructing cancer genomes from paired-end sequencing data.
BMC Bioinform., 2012

2011
Detection of recurrent rearrangement breakpoints from copy number data.
BMC Bioinform., 2011

Workshop: Characterization of structural variants with next generation DNA sequencing.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010
Gremlin: An Interactive Visualization Model for Analyzing Genomic Rearrangements.
IEEE Trans. Vis. Comput. Graph., 2010

Environmental chemistry through intelligent atmospheric data analysis.
Environ. Model. Softw., 2010

Structural variation analysis with strobe reads.
Bioinform., 2010

2009
Discovery of phosphorylation motif mixtures in phosphoproteomics data.
Bioinform., 2009

2006
Adapting K-Medians to Generate Normalized Cluster Centers.
Proceedings of the Sixth SIAM International Conference on Data Mining, 2006


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