Anna Kreshuk

According to our database, Anna Kreshuk authored at least 30 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities.

Charlotte Bunne, Yusuf H. Roohani, Yanay Rosen, Ankit Gupta, Xikun Zhang, Marcel Roed, Theo Alexandrov, Mohammed AlQuraishi, Patricia Brennan, Daniel B. Burkhardt, Andrea Califano, Jonah Cool, Abby F. Dernburg, Kirsty Ewing, Emily B. Fox, Matthias Haury, Amy E. Herr, Eric Horvitz, Patrick D. Hsu, Viren Jain, Gregory R. Johnson, Thomas Kalil, David R. Kelley, Shana O. Kelley, Anna Kreshuk, Tim Mitchison, Stephani Otte, Jay Shendure, Nicolas J. Sofroniew, Fabian J. Theis, Christina V. Theodoris, Srigokul Upadhyayula, Marc Valer, Bo Wang, Eric Xing, Serena Yeung-Levy, Marinka Zitnik, Theofanis Karaletsos, Aviv Regev, Emma Lundberg, Jure Leskovec, Stephen R. Quake

CoRR, 2024

2023

Understanding metric-related pitfalls in image analysis validation.

Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein

CoRR, 2023

Reinforcement learning for instance segmentation with high-level priors.

Paul Hilt, Maedeh Zarvandi, Edgar Kaziakhmedov, Sourabh Bhide, Maria Leptin, Constantin Pape, Anna Kreshuk

Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023

2022

From Shallow to Deep: Exploiting Feature-Based Classifiers for Domain Adaptation in Semantic Segmentation.

Alex Matskevych, Adrian Wolny, Constantin Pape, Anna Kreshuk

Frontiers Comput. Sci., 2022

Metrics reloaded: Pitfalls and recommendations for image analysis validation.

Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir M. Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger

CoRR, 2022

Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings.

Adrian Wolny, Qin Yu, Constantin Pape, Anna Kreshuk

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022

GASP, a generalized framework for agglomerative clustering of signed graphs and its application to Instance Segmentation.

Alberto Bailoni, Constantin Pape, Nathan Hütsch, Steffen Wolf, Thorsten Beier, Anna Kreshuk, Fred A. Hamprecht

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022

2021

The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning.

Steffen Wolf, Alberto Bailoni, Constantin Pape, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht

IEEE Trans. Pattern Anal. Mach. Intell., 2021

Developing open-source software for bioimage analysis: opportunities and challenges.

Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase

F1000Research, 2021

Stateless actor-critic for instance segmentation with high-level priors.

Paul Hilt, Edgar Kaziakhmedov, Sourabh Bhide, Maria Leptin, Constantin Pape, Anna Kreshuk

CoRR, 2021

2020

The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation.

Steffen Wolf, Yuyan Li, Constantin Pape, Alberto Bailoni, Anna Kreshuk, Fred A. Hamprecht

Proceedings of the Computer Vision - ECCV 2020, 2020

Proposal-Free Volumetric Instance Segmentation from Latent Single-Instance Masks.

Alberto Bailoni, Constantin Pape, Steffen Wolf, Anna Kreshuk, Fred A. Hamprecht

Proceedings of the Pattern Recognition - 42nd DAGM German Conference, DAGM GCPR 2020, Tübingen, Germany, September 28, 2020

2019

QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain.

Sharon C. Yates, Nicolaas E. Groeneboom, Christopher Coello, Stefan F. Lichtenthaler, Peer-Hendrik Kuhn, Hans-Ulrich Demuth, Maike Hartlage-Rübsamen, Steffen Roßner, Trygve B. Leergaard, Anna Kreshuk, Maja A. Puchades, Jan G. Bjaalie

Frontiers Neuroinformatics, 2019

Leveraging Domain Knowledge to Improve Microscopy Image Segmentation With Lifted Multicuts.

Constantin Pape, Alex Matskevych, Adrian Wolny, Julian Hennies, Giulia Mizzon, Marion Louveaux, Jacob Musser, Alexis Maizel, Detlev Arendt, Anna Kreshuk

Frontiers Comput. Sci., 2019

A Generalized Framework for Agglomerative Clustering of Signed Graphs applied to Instance Segmentation.

Alberto Bailoni, Constantin Pape, Steffen Wolf, Thorsten Beier, Anna Kreshuk, Fred A. Hamprecht

CoRR, 2019

Leveraging Domain Knowledge to improve EM image segmentation with Lifted Multicuts.

Constantin Pape, Alex Matskevych, Julian Hennies, Anna Kreshuk

CoRR, 2019

The Mutex Watershed and its Objective: Efficient, Parameter-Free Image Partitioning.

Steffen Wolf, Alberto Bailoni, Constantin Pape, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht

CoRR, 2019

Synthetic Patches, Real Images: Screening for Centrosome Aberrations in EM Images of Human Cancer Cells.

Artem Lukoyanov, Isabella Haberbosch, Constantin Pape, Alwin Krämer, Yannick Schwab, Anna Kreshuk

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Domain Adaptive Segmentation In Volume Electron Microscopy Imaging.

Joris Roels, Julian Hennies, Yvan Saeys, Wilfried Philips, Anna Kreshuk

Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

2018

Neuron Segmentation With High-Level Biological Priors.

Nikola Krasowski, Thorsten Beier, Graham Knott, Ullrich Köthe, Fred A. Hamprecht, Anna Kreshuk

IEEE Trans. Medical Imaging, 2018

The Mutex Watershed: Efficient, Parameter-Free Image Partitioning.

Steffen Wolf, Constantin Pape, Alberto Bailoni, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht

Proceedings of the Computer Vision - ECCV 2018, 2018

2017

Solving Large Multicut Problems for Connectomics via Domain Decomposition.

Constantin Pape, Thorsten Beier, Peter Li, Viren Jain, Davi D. Bock, Anna Kreshuk

Proceedings of the 2017 IEEE International Conference on Computer Vision Workshops, 2017

2015

ROOT - A C++ Framework for Petabyte Data Storage, Statistical Analysis and Visualization.

Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta, Axel Naumann, Eddy Offermann, Valeriy Onuchin, Suzanne Panacek, Fons Rademakers, Paul Russo, Matevz Tadel

CoRR, 2015

Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain.

Anna Kreshuk, Jan Funke, Albert Cardona, Fred A. Hamprecht

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Improving 3D EM data segmentation by joint optimization over boundary evidence and biological priors.

Nikola Krasowski, Thorsten Beier, Graham W. Knott, Ullrich Köthe, Fred A. Hamprecht, Anna Kreshuk

Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

2012

Automated Analysis of Biomedical Data from Low to High Resolution

Anna Kreshuk

PhD thesis, 2012

2011

ROOT - A C++ framework for petabyte data storage, statistical analysis and visualization.

Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta, Axel Naumann

Comput. Phys. Commun., 2011

Automated segmentation of synapses in 3D EM data.

Anna Kreshuk, Christoph N. Straehle, Christoph Sommer, Ullrich Köthe, Graham Knott, Fred A. Hamprecht

Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

2009

ROOT - A C++ framework for petabyte data storage, statistical analysis and visualization.

Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta

Comput. Phys. Commun., 2009

Developments in ROOT I/O and trees

Rene Brun, Philippe Canal, Mario Frank, Anna Kreshuk, S. Linev, Paul Russo, Fons Rademakers

CoRR, 2009