Anna Gambin

According to our database, Anna Gambin authored at least 52 papers between 1994 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Critical assessment of synthetic accessibility scores in computer-assisted synthesis planning.

Grzegorz Skoraczynski, Mateusz Kitlas, Blazej Miasojedow, Anna Gambin

J. Cheminformatics, December, 2023

2022

<tt>TADeus2</tt>: a web server facilitating the clinical diagnosis by pathogenicity assessment of structural variations disarranging 3D chromatin structure.

Barbara Poszewiecka, Victor Murcia Pienkowski, Karol Nowosad, Jérôme D. Robin, Krzysztof Gogolewski, Anna Gambin

Nucleic Acids Res., 2022

2020

Low Entropy Sub-Networks Prevent the Integration of Metabolomic and Transcriptomic Data.

Krzysztof Gogolewski, Marcin Kostecki, Anna Gambin

Entropy, 2020

Knot_pull - python package for biopolymer smoothing and knot detection.

Aleksandra I. Jarmolinska, Anna Gambin, Joanna I. Sulkowska

Bioinform., 2020

2019

Truncated Robust Principal Component Analysis and Noise Reduction for Single Cell RNA Sequencing Data.

Krzysztof Gogolewski, Maciej Sykulski, Neo Christopher Chung, Anna Gambin

J. Comput. Biol., 2019

Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data.

Neo Christopher Chung, Blazej Miasojedow, Michal Startek, Anna Gambin

BMC Bioinform., 2019

2018

Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry.

Michal Aleksander Ciach, Mateusz Krzysztof Lacki, Blazej Miasojedow, Frederik Lermyte, Dirk Valkenborg, Frank Sobott, Anna Gambin

J. Comput. Biol., 2018

Preface.

Anna Gambin, Monika Heiner

Fundam. Informaticae, 2018

The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra with Application to Spectral Deconvolution.

Szymon Majewski, Michal Aleksander Ciach, Michal Startek, Wanda Niemyska, Blazej Miasojedow, Anna Gambin

Proceedings of the 18th International Workshop on Algorithms in Bioinformatics, 2018

Truncated Robust Principal Component Analysis and Noise Reduction for Single Cell RNA-seq Data.

Krzysztof Gogolewski, Maciej Sykulski, Neo Christopher Chung, Anna Gambin

Proceedings of the Bioinformatics Research and Applications - 14th International Symposium, 2018

PCA-like Methods for the Integration of Single Cell RNA-seq Data with Metabolic Networks.

Krzysztof Gogolewski, Anna Gambin

Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018

TADeus-a tool for clinical interpretation of structural variants modifying chromatin organization.

Barbara Poszewiecka, Pawel Stankiewicz, Tomasz Gambin, Anna Gambin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Renal cell carcinoma classification: a case study of pitfalls associated with metabolic landscape analysis.

Krzysztof Gogolewski, Marcin Kostecki, Anna Gambin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

Inferring transposons activity chronology by TRANScendence - TEs database and de-novo mining tool.

Michal Startek, Jakub Nogly, Agnieszka Gromadka, Dariusz Grzebelus, Anna Gambin

BMC Bioinform., 2017

2016

Improvement of the <i>k</i>-nn Entropy Estimator with Applications in Systems Biology.

Agata Charzynska, Anna Gambin

Entropy, 2016

2015

Computational modeling of sphingolipid metabolism.

Weronika Wronowska, Agata Charzynska, Karol Nienaltowski, Anna Gambin

BMC Syst. Biol., 2015

2014

StochDecomp - Matlab package for noise decomposition in stochastic biochemical systems.

Tomasz Jetka, Agata Charzynska, Anna Gambin, Michael P. H. Stumpf, Michal Komorowski

Bioinform., 2014

2013

Multiple samples aCGH analysis for rare CNVs detection.

Maciej Sykulski, Tomasz Gambin, Magdalena Bartnik, Katarzyna Derwinska, Barbara Wisniowiecka-Kowalnik, Pawel Stankiewicz, Anna Gambin

J. Clin. Bioinform., 2013

Functional performance of aCGH design for clinical cytogenetics.

Tomasz Gambin, Pawel Stankiewicz, Maciej Sykulski, Anna Gambin

Comput. Biol. Medicine, 2013

2012

Preface.

Anna Gambin, Anna K. Marciniak-Czochra

Fundam. Informaticae, 2012

Alan Turing and Systems Biology.

Anna Gambin, Anna K. Marciniak-Czochra, Damian Niwinski

ERCIM News, 2012

Tav4SB: integrating tools for analysis of kinetic models of biological systems.

Mikolaj Rybinski, Michal Lula, Pawel Banasik, Slawomir Lasota, Anna Gambin

BMC Syst. Biol., 2012

Inferring serum proteolytic activity from LC-MS/MS data.

Piotr Dittwald, Jerzy Ostrowski, Jakub Karczmarski, Anna Gambin

BMC Bioinform., 2012

2011

Robustness of Exon CGH Array Designs.

Tomasz Gambin, Pawel Stankiewicz, Maciej Sykulski, Anna Gambin

Proceedings of the BIOINFORMATICS 2011, 2011

Subset Seed Extension to Protein BLAST.

Anna Gambin, Slawomir Lasota, Michal Startek, Maciej Sykulski, Laurent Noé, Gregory Kucherov

Proceedings of the BIOINFORMATICS 2011, 2011

Efficient Multiple Samples aCGH Analysis for Rare CNVs Detection.

Maciej Sykulski, Tomasz Gambin, Magdalena Bartnik, Katarzyna Derwinska, Barbara Wisniowiecka-Kowalnik, Pawel Stankiewicz, Anna Gambin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010

Preface.

Anna Gambin, Damian Niwinski, Pawel Urzyczyn

Fundam. Informaticae, 2010

Modeling Proteolysis from Mass Spectrometry Proteomic Data.

Anna Gambin, Boguslaw Kluge

Fundam. Informaticae, 2010

2009

On Subset Seeds for Protein Alignment.

Mikhail A. Roytberg, Anna Gambin, Laurent Noé, Slawomir Lasota, Eugenia Furletova, Ewa Szczurek, Gregory Kucherov

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Modeling Exopeptidase Activity from LC-MS Data.

Boguslaw Kluge, Anna Gambin, Wojciech Niemiro

J. Comput. Biol., 2009

Classification of peptide mass fingerprint data by novel no-regret boosting method.

Anna Gambin, Ewa Szczurek, Janusz Dutkowski, Magda Bakun, Michal Dadlez

Comput. Biol. Medicine, 2009

2008

Aggregation Algorithms for Perturbed Markov Chains with Applications to Networks Modeling.

Anna Gambin, Piotr Krzyzanowski, Piotr Pokarowski

SIAM J. Sci. Comput., 2008

Efficient Seeding Techniques for Protein Similarity Search.

Mikhail A. Roytberg, Anna Gambin, Laurent Noé, Slawomir Lasota, Eugenia Furletova, Ewa Szczurek, Gregory Kucherov

Proceedings of the Bioinformatics Research and Development, 2008

2007

New Metrics for Phylogenies.

Lukasz Bolikowski, Anna Gambin

Fundam. Informaticae, 2007

On consensus biomarker selection.

Janusz Dutkowski, Anna Gambin

BMC Bioinform., 2007

CTX-BLAST: context sensitive version of protein BLAST.

Anna Gambin, Piotr Wojtalewicz

Bioinform., 2007

No-Regret Boosting.

Anna Gambin, Ewa Szczurek

Proceedings of the Adaptive and Natural Computing Algorithms, 8th International Conference, 2007

2006

Alignment with Context Dependent Scoring Function.

Anna Gambin, Jerzy Tiuryn, Jerzy Tyszkiewicz

J. Comput. Biol., 2006

Analyzing Stationary States of Gene Regulatory Network Using Petri Nets.

Anna Gambin, Slawomir Lasota, Michai Rutkowski

Silico Biol., 2006

Applying dynamic Bayesian networks to perturbed gene expression data.

Norbert Dojer, Anna Gambin, Andrzej Mizera, Bartek Wilczynski, Jerzy Tiuryn

BMC Bioinform., 2006

Efficient Model-Based Clustering for LC-MS Data.

Marta Luksza, Boguslaw Kluge, Jerzy Ostrowski, Jakub Karczmarski, Anna Gambin

Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

2005

Almost FPRAS for Lattice Models of Protein Folding.

Anna Gambin, Damian Wójtowicz

Proceedings of the Experimental and Efficient Algorithms, 4th InternationalWorkshop, 2005

2002

Contextual alignment of biological sequences.

Anna Gambin, Slawomir Lasota, Radoslaw Szklarczyk, Jerzy Tiuryn, Jerzy Tyszkiewicz

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001

On Different Models for Packet Flow in Multistage Interconnection Networks.

Martin Dietzfelbinger, Anna Gambin, Slawomir Lasota

Fundam. Informaticae, 2001

A Combinatorial Aggregation Algorithm for Stationary Distribution of a Large Markov Chain.

Anna Gambin, Piotr Pokarowski

Proceedings of the Fundamentals of Computation Theory, 13th International Symposium, 2001

A New Combinatorial Algorithm for Large Markov Chains (Extended Abstract).

Anna Gambin, Piotr Pokarowski

Proceedings of the Computer Algebra in Scientific Computing, 2001

1999

Randomized Gossiping by Packets in Faulty Networks.

Anna Gambin, Adam Malinowski

Proceedings of the SOFSEM '99, Theory and Practice of Informatics, 26th Conference on Current Trends in Theory and Practice of Informatics, Milovy, Czech Republic, November 27, 1999

On Approximating the Number of Bases of Exchange Preserving Matroids.

Anna Gambin

Proceedings of the Mathematical Foundations of Computer Science 1999, 1999

1998

Randomized Meldable Priority Queues.

Anna Gambin, Adam Malinowski

Proceedings of the SOFSEM '98: Theory and Practice of Informatics, 1998

1996

On the Semantics of Multistage Interconnection Networks.

Anna Gambin, Slawomir Lasota

Proceedings of the SOFSEM '96: Theory and Practice of Informatics, 1996

Shared-Memory Simulations on a Faulty-Memory DMM.

Bogdan S. Chlebus, Anna Gambin, Piotr Indyk

Proceedings of the Automata, Languages and Programming, 23rd International Colloquium, 1996

1994

PRAM Computations Resilient to Memory Faults.

Bogdan S. Chlebus, Anna Gambin, Piotr Indyk

Proceedings of the Algorithms, 1994