Ann E. Loraine

According to our database, Ann E. Loraine authored at least 19 papers between 2002 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

BioViz Connect: Web Application Linking CyVerse Cloud Resources to Genomic Visualization in the Integrated Genome Browser.

Karthik Raveendran, Nowlan H. Freese, Chaitanya Kintali, Srishti Tiwari, Pawan Bole, Chester Dias, Ann E. Loraine

Frontiers Bioinform., 2022

Integrated Genome Browser App Store.

Sameer Shanbhag, Riddhi Patil, Noor Zahara, Chirag Shetty, Rachel Weidenhammer, Sneha Watharkar, Pranav Tambvekar, Philip P. Badzuh, Chester Dias, Narendra Vankayala, Prutha Kulkarni, Charan Vallapureddy, Shamika Kulkarni, Pooja Nikhare, Nowlan H. Freese, Ann E. Loraine

Bioinform., 2022

2016

ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins.

Tarun Mall, John Eckstein, David C. Norris, Hiral Vora, Nowlan H. Freese, Ann E. Loraine

Bioinform., 2016

Integrated genome browser: visual analytics platform for genomics.

Nowlan H. Freese, David C. Norris, Ann E. Loraine

Bioinform., 2016

2014

Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems.

Ruolin Liu, Ann E. Loraine, Julie A. Dickerson

BMC Bioinform., 2014

2009

Genoviz Software Development Kit: Java tool kit for building genomics visualization applications.

Gregg A. Helt, John W. Nicol, Ed Erwin, Eric Blossom, Steven G. Blanchard Jr., Stephen A. Chervitz, Cyrus L. Harmon, Ann E. Loraine

BMC Bioinform., 2009

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets.

John W. Nicol, Gregg A. Helt, Steven G. Blanchard Jr., Archana Raja, Ann E. Loraine

Bioinform., 2009

2008

Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient.

Jianchao Yao, Chunqi Chang, Mari L. Salmi, Yeung Sam Hung, Ann E. Loraine, Stanley J. Roux

BMC Bioinform., 2008

Bioinformatics, Genomics, and Proteomics: Getting the Big Picture (Biotechnology in the 21st Century): Ann Finney Batiza.

Ann E. Loraine

Briefings Bioinform., 2008

2005

Gene-Ontology-based analysis of gene expression changes in early development of Ceratopteris spores.

Ann E. Loraine, Mari L. Salmi, Stephen C. Stout, Stanley J. Roux

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

2004

The Effects of Alternative Splicing on Transmembrane Proteins in the Mouse Genome.

Melissa S. Cline, Ron Shigeta, Raymond Wheeler, Michael A. Siani-Rose, David Kulp, Ann E. Loraine

Proceedings of the Biocomputing 2004, 2004

Gene Length and Alternative Transcription in Fruit Fly.

Boris Budagyan, Ann E. Loraine

Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003

NetAffx: Affymetrix probesets and annotations.

Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Venu Valmeekam, Shaw Sun, David Kulp, Michael A. Siani-Rose

Nucleic Acids Res., 2003

Exploring Alternative Transcript Structure in the Humangenome Using Blocks and Interpro.

Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose

J. Bioinform. Comput. Biol., 2003

2002

Visualizing the genome: techniques for presenting human genome data and annotations.

Ann E. Loraine, Gregg A. Helt

BMC Bioinform., 2002

NetAffx: affymetrix probeset annotations.

Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Stephen A. Chervitz, David Kulp, Michael A. Siani-Rose

Proceedings of the 2002 ACM Symposium on Applied Computing (SAC), 2002

Structure-Based Comparison of Four Eukaryotic Genomes.

Melissa S. Cline, Guoying Liu, Ann E. Loraine, Ron Shigeta, Jill Cheng, Gangwu Mei, David Kulp, Michael A. Siani-Rose

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

Protein-Based Analysis of Alternative Splicing in the Human Genome.

Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose

Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002

Visualization Techniques for Genomic Data.

Ann E. Loraine, Gregg A. Helt

Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002