Andrew Wen
Orcid: 0000-0001-9090-8028
According to our database1,
Andrew Wen
authored at least 53 papers
between 2017 and 2024.
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Bibliography
2024
FedFSA: Hybrid and federated framework for functional status ascertainment across institutions.
J. Biomed. Informatics, 2024
A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction.
J. Am. Medical Informatics Assoc., 2024
Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction.
J. Am. Medical Informatics Assoc., 2024
CoRR, 2024
2023
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).
J. Am. Medical Informatics Assoc., November, 2023
The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era.
npj Digit. Medicine, 2023
MLGAN: a Meta-Learning based Generative Adversarial Network adapter for rare disease differentiation tasks.
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023
2022
npj Digit. Medicine, 2022
Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration.
J. Biomed. Informatics, 2022
Int. J. Medical Informatics, 2022
Briefings Bioinform., 2022
Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing.
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022
Towards User-centered Corpus Development: Lessons Learnt from Designing and Developing MedTator.
Proceedings of the AMIA 2022, 2022
2021
An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses.
J. Biomed. Informatics, 2021
Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data.
Int. J. Medical Informatics, 2021
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C).
CoRR, 2021
CoRR, 2021
Comparisons of Graph Neural Networks on Cancer Classification Leveraging a Joint of Phenotypic and Genetic Features.
CoRR, 2021
Briefings Bioinform., 2021
The Implication of Latent Information Quality to the Reproducibility of Secondary Use of Electronic Health Records.
Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021
On Constraints and Considerations for Extending Support for Natural Language Processing-Based FHIR Resource Generation.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
FHIRTime: Standardizing Temporal Patterns Identified from Clinical Narratives Using HL7 FHIR.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Disparity analysis of patient portal messaging use for COVID-19 in urban versus rural locality.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Patient Asynchronous Response to Coronavirus Disease 2019 (COVID-19): A Retrospective Analysis of Patient Portal Messages.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
2020
A Query Taxonomy Describes Performance of Patient-Level Retrieval from Electronic Health Record Data.
Proceedings of the ACM WSDM 2020 Health Search and Data Mining Workshop, 2020
Proceedings of the 33rd IEEE International Symposium on Computer-Based Medical Systems, 2020
Subgrouping Rare Disease Patients Leveraging the Human Phenotype Ontology Embeddings.
Proceedings of the 33rd IEEE International Symposium on Computer-Based Medical Systems, 2020
Enrich Rare Disease Phenotypic Characterizations via a Graph Convolutional Network Based Recommendation System.
Proceedings of the 33rd IEEE International Symposium on Computer-Based Medical Systems, 2020
Accelerating Development of Learning Healthcare Systems via Distantly Supervised Knowledge Discovery.
Proceedings of the AMIA 2020, 2020
A Perturbation Approach to Assessing BERT Robustness for Different Linguistic Aspects in Medical Question-Answering.
Proceedings of the AMIA 2020, 2020
Predicting Section Location of Clinical Sentences using BERT Encoder - A Pilot Study.
Proceedings of the AMIA 2020, 2020
2019
Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation.
npj Digit. Medicine, 2019
ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model.
J. Biomed. Informatics, 2019
HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology.
J. Biomed. Informatics, 2019
Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries.
J. Biomed. Informatics, 2019
Adapting and evaluating a deep learning language model for clinical why-question answering.
CoRR, 2019
CoRR, 2019
CoRR, 2019
CREATE: Cohort Retrieval Enhanced by Analysis of Text from Electronic Health Records using OMOP Common Data Model.
CoRR, 2019
Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019
Clinical Use of an Information Retrieval Framework for Cohort Discovery from Electronic Health Records.
Proceedings of the AMIA 2019, 2019
2018
MayoNLPTeam at the TREC 2018 Precision Medicine Track: Simple Information Retrieval Approach Is the Best.
Proceedings of the Twenty-Seventh Text REtrieval Conference, 2018
Constructing Node Embeddings for Human Phenotype Ontology to Assist Phenotypic Similarity Measurement.
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018
Leveraging Association Rule Mining to Detect Pathophysiological Mechanisms of Chronic Kidney Disease Complicated by Metabolic Syndrome.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
EMIRS: An Electronic Medical Information Retrieval System by Leveraging both Structured and Unstructured Electronic Health Records.
Proceedings of the AMIA 2018, 2018
Developing a RadLex-based Name Entity Recognition Tool for Mining Free-Text Radiology Reports.
Proceedings of the AMIA 2018, 2018
Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP.
Proceedings of the AMIA 2018, 2018
2017
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017