Andrew S. Allen

According to our database, Andrew S. Allen authored at least 14 papers between 2008 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2022

Focused goodness of fit tests for gene set analyses.

Mengqi Zhang, Sahar Gelfman, Cristiane Araujo Martins Moreno, Janice M. McCarthy, Matthew B. Harms, David B. Goldstein, Andrew S. Allen

Briefings Bioinform., 2022

2021

A Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors.

Kevin A. Murgas, Yanlin Ma, Lidea K. Shahidi, Sayan Mukherjee, Andrew S. Allen, Darryl Shibata, Marc D. Ryser

Bioinform., 2021

2020

Bayesian estimation of genetic regulatory effects in high-throughput reporter assays.

William H. Majoros, Young-Sook Kim, Alejandro Barrera, Fan Li, Xingyan Wang, Sarah J. Cunningham, Graham D. Johnson, Cong Guo, William L. Lowe, Denise M. Scholtens, M. Geoffrey Hayes, Timothy E. Reddy, Andrew S. Allen

Bioinform., 2020

2019

Efficient estimation of grouped survival models.

Zhiguo Li, Jiaxing Lin, Alexander B. Sibley, Tracy Truong, Katherina C. Chua, Yu Jiang, Janice M. McCarthy, Deanna L. Kroetz, Andrew S. Allen, Kouros Owzar

BMC Bioinform., 2019

2018

meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays.

Sahar Gelfman, Quanli Wang, Yi-Fan Lu, Diana Hall, Christopher D. Bostick, Ryan Dhindsa, Matt Halvorsen, K. Melodi McSweeney, Ellese Cotterill, Tom Edinburgh, Michael A. Beaumont, Wayne N. Frankel, Slavé Petrovski, Andrew S. Allen, Michael J. Boland, David B. Goldstein, Stephen J. Eglen

PLoS Comput. Biol., 2018

bcSeq: an R package for fast sequence mapping in high-throughput shRNA and CRISPR screens.

Jiaxing Lin, Jeremy Gresham, Tongrong Wang, So Young Kim, James Alvarez, Jeffrey S. Damrauer, Scott Floyd, Joshua A. Granek, Andrew S. Allen, Cliburn Chan, Jichun Xie, Kouros Owzar

Bioinform., 2018

2017

Mapping eQTL by leveraging multiple tissues and DNA methylation.

Chaitanya R. Acharya, Kouros Owzar, Andrew S. Allen

BMC Bioinform., 2017

High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.

William H. Majoros, Michael Campbell, Carson Holt, Erin K. DeNardo, Doreen Ware, Andrew S. Allen, Mark Yandell, Timothy E. Reddy

Bioinform., 2017

Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding.

Jingkang Zhao, Dongshunyi Li, Jungkyun Seo, Andrew S. Allen, Raluca Gordân

Proceedings of the Research in Computational Molecular Biology, 2017

2016

Exploiting expression patterns across multiple tissues to map expression quantitative trait loci.

Chaitanya R. Acharya, Janice M. McCarthy, Kouros Owzar, Andrew S. Allen

BMC Bioinform., 2016

2014

Ruratae: a physics-based audio engine.

Andrew S. Allen

PhD thesis, 2014

2013

Leveraging Prior Information to Detect Causal Variants via Multi-Variant Regression.

Nanye Long, Samuel P. Dickson, Jessica M. Maia, Hee Shin Kim, Qianqian Zhu, Andrew S. Allen

PLoS Comput. Biol., 2013

2011

SVA: software for annotating and visualizing sequenced human genomes.

Dongliang Ge, Elizabeth K. Ruzzo, Kevin V. Shianna, Min He, Kimberly Pelak, Erin L. Heinzen, Anna C. Need, Elizabeth T. Cirulli, Jessica M. Maia, Samuel P. Dickson, Mingfu Zhu, Abanish Singh, Andrew S. Allen, David B. Goldstein

Bioinform., 2011

2008

Invited Keynote Talk: Haplotype Sharing for Genome-Wide Case-Control Association Studies.

Andrew S. Allen

Proceedings of the Bioinformatics Research and Applications, 2008