Andrew MacKinlay

According to our database, Andrew MacKinlay authored at least 28 papers between 2005 and 2018.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2018

A hybrid approach for automated mutation annotation of the extended human mutation landscape in scientific literature.

Antonio Jimeno-Yepes, Andrew D. MacKinlay, Natalie Gunn, Christine Schieber, Noel Faux, Matthew Downton, Benjamin Goudey, Richard L. Martin

Proceedings of the AMIA 2018, 2018

2017

Named Entity Recognition with Stack Residual LSTM and Trainable Bias Decoding.

Quan Tran, Andrew MacKinlay, Antonio Jimeno-Yepes

Proceedings of the Eighth International Joint Conference on Natural Language Processing, 2017

Detection of adverse drug reactions using medical named entities on Twitter.

Andrew MacKinlay, Hafsah Aamer, Antonio Jimeno-Yepes

Proceedings of the AMIA 2017, 2017

2016

NER for Medical Entities in Twitter using Sequence to Sequence Neural Networks.

Antonio Jimeno-Yepes, Andrew MacKinlay

Proceedings of the Australasian Language Technology Association Workshop 2016, Melbourne, Australia, December 5, 2016

Syndromic Surveillance using Generic Medical Entities on Twitter.

Pin Huang, Andrew MacKinlay, Antonio Jimeno-Yepes

Proceedings of the Australasian Language Technology Association Workshop 2016, Melbourne, Australia, December 5, 2016

Temporal Modelling of Geospatial Words in Twitter.

Bo Han, Antonio Jimeno-Yepes, Andrew MacKinlay, Lianhua Chi

Proceedings of the Australasian Language Technology Association Workshop 2016, Melbourne, Australia, December 5, 2016

2015

Optimizing graph-based patterns to extract biomedical events from the literature.

Haibin Liu, Karin Verspoor, Donald C. Comeau, Andrew D. MacKinlay, W. John Wilbur

BMC Bioinform., December, 2015

Identifying Diseases, Drugs, and Symptoms in Twitter.

Antonio Jimeno-Yepes, Andrew MacKinlay, Bo Han, Qiang Chen

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Identification and Analysis of Medical Entity Co-occurrences in Twitter.

Andrew MacKinlay, Antonio Jimeno-Yepes, Bo Han

Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015

Investigating Public Health Surveillance using Twitter.

Antonio Jimeno-Yepes, Andrew MacKinlay, Bo Han

Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015

2014

Cross-hospital portability of information extraction of cancer staging information.

David Martínez, Graham Pitson, Andrew MacKinlay, Lawrence Cavedon

Artif. Intell. Medicine, 2014

Integrating UIMA with Alveo, a human communication science virtual laboratory.

Dominique Estival, Steve Cassidy, Karin Verspoor, Andrew MacKinlay, Denis Burnham

Proceedings of the Workshop on Open Infrastructures and Analysis Frameworks for HLT, 2014

Deep Belief Networks and Biomedical Text Categorisation.

Antonio Jimeno-Yepes, Andrew MacKinlay, Justin Bedo, Rahil Garvani, Qiang Chen

Proceedings of the Australasian Language Technology Association Workshop, 2014

Identifying Twitter Location Mentions.

Bo Han, Antonio Jimeno-Yepes, Andrew MacKinlay, Qiang Chen

Proceedings of the Australasian Language Technology Association Workshop, 2014

2013

Detection of Protein Catalytic Sites in the Biomedical Literature.

Karin Verspoor, Andrew MacKinlay, Judith D. Cohn, Michael E. Wall

Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

How Noisy Social Media Text, How Diffrnt Social Media Sources?

Timothy Baldwin, Paul Cook, Marco Lui, Andrew MacKinlay, Li Wang

Proceedings of the Sixth International Joint Conference on Natural Language Processing, 2013

Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data.

Andrew MacKinlay, David Martínez, Antonio Jimeno-Yepes, Haibin Liu, W. John Wilbur, Karin Verspoor

Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics.

Haibin Liu, Karin Verspoor, Donald C. Comeau, Andrew MacKinlay, W. John Wilbur

Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

2012

Detecting modification of biomedical events using a deep parsing approach.

Andrew MacKinlay, David Martínez, Timothy Baldwin

BMC Medical Informatics Decis. Mak., 2012

The Effects of Semantic Annotations on Precision Parse Ranking.

Andrew MacKinlay, Rebecca Dridan, Diana McCarthy, Timothy Baldwin

Proceedings of the First Joint Conference on Lexical and Computational Semantics, 2012

Simple Similarity-based Question Answering Strategies for Biomedical Text.

David Martínez, Andrew MacKinlay, Diego Mollá Aliod, Lawrence Cavedon, Karin Verspoor

Proceedings of the CLEF 2012 Evaluation Labs and Workshop, 2012

Extracting structured information from free-text medication prescriptions using dependencies.

Andrew D. MacKinlay, Karin M. Verspoor

Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, 2012

2011

Treeblazing: Using External Treebanks to Filter Parse Forests for Parse Selection and Treebanking.

Andrew MacKinlay, Rebecca Dridan, Dan Flickinger, Stephan Oepen, Timothy Baldwin

Proceedings of the Fifth International Joint Conference on Natural Language Processing, 2011

2009

A Baseline Approach to the RTE5 Search Pilot.

Andrew MacKinlay, Timothy Baldwin

Proceedings of the Second Text Analysis Conference, 2009

Biomedical Event Annotation with CRFs and Precision Grammars.

Andrew MacKinlay, David Martínez, Timothy Baldwin

Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

2006

Reconsidering Language Identification for Written Language Resources.

Baden Hughes, Timothy Baldwin, Steven Bird, Jeremy Nicholson, Andrew MacKinlay

Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006

2005

POS Tagging with a More Informative Tagset.

Andrew MacKinlay, Timothy Baldwin

Proceedings of the Australasian Language Technology Workshop, 2005

Using Diverse Information Sources to Retrieve Samples of Low Density Languages.

Andrew MacKinlay

Proceedings of the Australasian Language Technology Workshop, 2005