Andrew Leaver-Fay

According to our database, Andrew Leaver-Fay authored at least 12 papers between 2004 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2020

Better together: Elements of successful scientific software development in a distributed collaborative community.

Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau

PLoS Comput. Biol., 2020

2017

A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design.

Rebecca F. Alford, Andrew Leaver-Fay, Lynda Gonzales, Erin L. Dolan, Jeffrey J. Gray

PLoS Comput. Biol., 2017

Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta.

Robert Kleffner, Jeff Flatten, Andrew Leaver-Fay, David Baker, Justin B. Siegel, Firas Khatib, Seth Cooper

Bioinform., 2017

2010

Predicting protein structures with a multiplayer online game.

Seth Cooper, Firas Khatib, Adrien Treuille, Janos Barbero, Jeehyung Lee, Michael Beenen, Andrew Leaver-Fay, David Baker, Zoran Popovic, Foldit players

Nat., 2010

The challenge of designing scientific discovery games.

Seth Cooper, Adrien Treuille, Janos Barbero, Andrew Leaver-Fay, Kathleen Tuite, Firas Khatib, Alex Cho Snyder, Michael Beenen, David Salesin, David Baker, Zoran Popovic

Proceedings of the International Conference on the Foundations of Digital Games, 2010

2008

On-the-Fly Rotamer Pair Energy Evaluation in Protein Design.

Andrew Leaver-Fay, Jack Snoeyink, Brian Kuhlman

Proceedings of the Bioinformatics Research and Applications, 2008

2007

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.

Ian W. Davis, Andrew Leaver-Fay, Vincent B. Chen, Jeremy N. Block, Gary J. Kapral, Xueyi Wang, Laura Weston Murray, W. Bryan Arendall III, Jack Snoeyink, Jane S. Richardson, David C. Richardson

Nucleic Acids Res., 2007

Faster placement of hydrogens in protein structures by dynamic programming.

Andrew Leaver-Fay, Yuanxin Liu, Jack Snoeyink, Xueyi Wang

ACM J. Exp. Algorithmics, 2007

Maintaining solvent accessible surface area under rotamer substitution for protein design.

Andrew Leaver-Fay, Glenn L. Butterfoss, Jack Snoeyink, Brian Kuhlman

J. Comput. Chem., 2007

2005

Rotamer-Pair Energy Calculations Using a Trie Data Structure.

Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink

Proceedings of the Algorithms in Bioinformatics, 5th International Workshop, 2005

An Adaptive Dynamic Programming Algorithm for the Side Chain Placement Problem.

Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink

Proceedings of the Biocomputing 2005, 2005

2004

Faster Placement of Hydrogens in Protein Structures by Dynamic Programming.

Andrew Leaver-Fay, Yuanxin Liu, Jack Snoeyink

Proceedings of the Sixth Workshop on Algorithm Engineering and Experiments and the First Workshop on Analytic Algorithmics and Combinatorics, 2004