Andrew J. Saykin

Orcid: 0000-0002-1376-8532

According to our database1, Andrew J. Saykin authored at least 138 papers between 1998 and 2024.

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Bibliography

2024
Interpretable deep clustering survival machines for Alzheimer's disease subtype discovery.
Medical Image Anal., 2024

Fused multi-modal similarity network as prior in guiding brain imaging genetic association.
Frontiers Big Data, 2024

Learning the Irreversible Progression Trajectory of Alzheimer's Disease.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

Integrative Analysis of Amyloid Imaging and Genetics Reveals Subtypes of Alzheimer Progression in Early Stage.
Proceedings of the Artificial Intelligence in Medicine - 22nd International Conference, 2024

2023
Brain-wide genome-wide colocalization study for integrating genetics, transcriptomics and brain morphometry in Alzheimer's disease.
NeuroImage, October, 2023

Integrative analysis of multi-omics and imaging data with incorporation of biological information via structural Bayesian factor analysis.
Briefings Bioinform., March, 2023

Class-Balanced Deep Learning with Adaptive Vector Scaling Loss for Dementia Stage Detection.
Proceedings of the Machine Learning in Medical Imaging - 14th International Workshop, 2023

Identifying Shared Neuroanatomic Architecture Between Cognitive Traits Through Multiscale Morphometric Correlation Analysis.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops, 2023

Multi-Group Tensor Canonical Correlation Analysis.
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023

2022
Multi-task learning based structured sparse canonical correlation analysis for brain imaging genetics.
Medical Image Anal., 2022

Deep learning-based identification of genetic variants: application to Alzheimer's disease classification.
Briefings Bioinform., 2022

Consistency of Graph Theoretical Measurements of Alzheimer's Disease Fiber Density Connectomes Across Multiple Parcellation Scales.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Preference Matrix Guided Sparse Canonical Correlation Analysis for Genetic Study of Quantitative Traits in Alzheimer's Disease.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Multi-Task Sparse Canonical Correlation Analysis with Application to Multi-Modal Brain Imaging Genetics.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Tau-related white-matter alterations along spatially selective pathways.
NeuroImage, 2021

Multidimensional representations in late-life depression: convergence in neuroimaging, cognition, clinical symptomatology and genetics.
CoRR, 2021

Integrative-omics for discovery of network-level disease biomarkers: a case study in Alzheimer's disease.
Briefings Bioinform., 2021

WEVar: a novel statistical learning framework for predicting noncoding regulatory variants.
Briefings Bioinform., 2021

A novel deep learning method for predictive modeling of microbiome data.
Briefings Bioinform., 2021

Interactive Visualization of Deep Learning for 3D Brain Data Analysis.
Proceedings of the 20th IEEE International Conference on Cognitive Informatics & Cognitive Computing, 2021

2020
Associating Multi-Modal Brain Imaging Phenotypes and Genetic Risk Factors via a Dirty Multi-Task Learning Method.
IEEE Trans. Medical Imaging, 2020

Cognitive biomarker prioritization in Alzheimer's Disease using brain morphometric data.
BMC Medical Informatics Decis. Mak., 2020

Multi-modal neuroimaging feature selection with consistent metric constraint for diagnosis of Alzheimer's disease.
Medical Image Anal., 2020

Detecting genetic associations with brain imaging phenotypes in Alzheimer's disease via a novel structured SCCA approach.
Medical Image Anal., 2020

Brain-wide structural connectivity alterations under the control of Alzheimer risk genes.
Int. J. Comput. Biol. Drug Des., 2020

Personalized Prioritization of Cognitive Biomarkers in Alzheimer's Disease via Learning to Rank using Brain Morphometric Data.
CoRR, 2020

Deep learning detection of informative features in tau PET for Alzheimer's disease classification.
BMC Bioinform., 2020

Regional imaging genetic enrichment analysis.
Bioinform., 2020

Identifying diagnosis-specific genotype-phenotype associations via joint multitask sparse canonical correlation analysis and classification.
Bioinform., 2020

Polygenic mediation analysis of Alzheimer's disease implicated intermediate amyloid imaging phenotypes.
Proceedings of the AMIA 2020, 2020

2019
Identifying Candidate Genetic Associations with MRI-Derived AD-Related ROI via Tree-Guided Sparse Learning.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Deep Learning in Alzheimer's disease: Diagnostic Classification and Prognostic Prediction using Neuroimaging Data.
CoRR, 2019

Identifying progressive imaging genetic patterns via multi-task sparse canonical correlation analysis: a longitudinal study of the ADNI cohort.
Bioinform., 2019

Prioritizing Amyloid Imaging Biomarkers in Alzheimer's Disease via Learning to Rank.
Proceedings of the Multimodal Brain Image Analysis and Mathematical Foundations of Computational Anatomy, 2019

A Dirty Multi-task Learning Method for Multi-modal Brain Imaging Genetics.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Diagnosis Status Guided Brain Imaging Genetics Via Integrated Regression And Sparse Canonical Correlation Analysis.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Mining Regional Imaging Genetic Associations via Voxel-wise Enrichment Analysis.
Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019

Disruption of gene co-expression network along the progression of Alzheimer's disease.
Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019

Prioritization of Cognitive Assessments in Alzheimer's Disease via Learning to Rank using Brain Morphometric Data.
Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019

2018
GPU Accelerated Browser for Neuroimaging Genomics.
Neuroinformatics, 2018

Longitudinal Genotype-Phenotype Association Study through Temporal Structure Auto-Learning Predictive Model.
J. Comput. Biol., 2018

Quantitative trait loci identification for brain endophenotypes via new additive model with random networks.
Bioinform., 2018

A novel SCCA approach via truncated ℓ1-norm and truncated group lasso for brain imaging genetics.
Bioinform., 2018

Network approaches to systems biology analysis of complex disease: integrative methods for multi-omics data.
Briefings Bioinform., 2018

Codon bias among synonymous rare variants is associated with Alzheimer's disease imaging biomarker.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

Heritability Estimation of Reliable Connectomic Features.
Proceedings of the Connectomics in NeuroImaging - Second International Workshop, 2018

Towards Subject and Diagnostic Identifiability in the Alzheimer's Disease Spectrum Based on Functional Connectomes.
Proceedings of the Graphs in Biomedical Image Analysis - and - Integrating Medical Imaging and Non-Imaging Modalities, 2018

Joint High-Order Multi-Task Feature Learning to Predict the Progression of Alzheimer's Disease.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Joint exploration and mining of memory-relevant brain anatomic and connectomic patterns via a three-way association model.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Predicting progressions of cognitive outcomes via high-order multi-modal multi-task feature learning.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Multiple incomplete views clustering via non-negative matrix factorization with its application in Alzheimer's disease analysis.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Interactive Machine Learning by Visualization: A Small Data Solution.
Proceedings of the IEEE International Conference on Big Data (IEEE BigData 2018), 2018

Fast Multi-Task SCCA Learning with Feature Selection for Multi-Modal Brain Imaging Genetics.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
Knowledge-driven binning approach for rare variant association analysis: application to neuroimaging biomarkers in Alzheimer's disease.
BMC Medical Informatics Decis. Mak., 2017

Two-dimensional enrichment analysis for mining high-level imaging genetic associations.
Brain Informatics, 2017

Brain explorer for connectomic analysis.
Brain Informatics, 2017

Tissue-specific network-based genome wide study of amygdala imaging phenotypes to identify functional interaction modules.
Bioinform., 2017

Identification of associations between genotypes and longitudinal phenotypes via temporally-constrained group sparse canonical correlation analysis.
Bioinform., 2017

Longitudinal Genotype-Phenotype Association Study via Temporal Structure Auto-learning Predictive Model.
Proceedings of the Research in Computational Molecular Biology, 2017

Identification of Discriminative Imaging Proteomics Associations in Alzheimer's Disease via a Novel Sparse Correlation Model>.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

Unified representation of tractography and diffusion-weighted MRI data using sparse multidimensional arrays.
Proceedings of the Advances in Neural Information Processing Systems 30: Annual Conference on Neural Information Processing Systems 2017, 2017

Transcriptome-Guided Imaging Genetic Analysis via a Novel Sparse CCA Algorithm.
Proceedings of the Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics, 2017

A Fast SCCA Algorithm for Big Data Analysis in Brain Imaging Genetics.
Proceedings of the Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics, 2017

Predicting Interrelated Alzheimer's Disease Outcomes via New Self-learned Structured Low-Rank Model.
Proceedings of the Information Processing in Medical Imaging, 2017

Identifying Associations Between Brain Imaging Phenotypes and Genetic Factors via a Novel Structured SCCA Approach.
Proceedings of the Information Processing in Medical Imaging, 2017

Network-based genome wide study of hippocampal imaging phenotype in Alzheimer's Disease to identify functional interaction modules.
Proceedings of the 2017 IEEE International Conference on Acoustics, 2017

BECA: A Software Tool for Integrated Visualization of Human Brain Data.
Proceedings of the Brain Informatics - International Conference, 2017

2016
Identifying Multimodal Intermediate Phenotypes Between Genetic Risk Factors and Disease Status in Alzheimer's Disease.
Neuroinformatics, 2016

Structured sparse CCA for brain imaging genetics via graph OSCAR.
BMC Syst. Biol., 2016

Structured sparse canonical correlation analysis for brain imaging genetics: an improved GraphNet method.
Bioinform., 2016

Network-based analysis of genetic variants associated with hippocampal volume in Alzheimer's disease: a study of ADNI cohorts.
BioData Min., 2016

Multigraph Visualization for Feature Classification of Brain Network Data.
Proceedings of the 7th International EuroVis Workshop on Visual Analytics, 2016

Diagnosis-Guided Method for Identifying Multi-Modality Neuroimaging Biomarkers Associated with Genetic Risk Factors in Alzheimer's Disease.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

Building a surface atlas of hippocampal subfields from high resolution T2-weighted MRI scans using landmark-free surface registration.
Proceedings of the IEEE 59th International Midwest Symposium on Circuits and Systems, 2016

A New Statistical Image Analysis Approach and Its Application to Hippocampal Morphometry.
Proceedings of the Medical Imaging and Augmented Reality - 7th International Conference, 2016

New Probabilistic Multi-graph Decomposition Model to Identify Consistent Human Brain Network Modules.
Proceedings of the IEEE 16th International Conference on Data Mining, 2016

Sparse Canonical Correlation Analysis via truncated ℓ1-norm with application to brain imaging genetics.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Partial volume correction in quantitative amyloid imaging.
NeuroImage, 2015

The role of visualization and 3-D printing in biological data mining.
BioData Min., 2015

Surface-based morphometric analysis of hippocampal subfields in mild cognitive impairment and Alzheimer's disease.
Proceedings of the IEEE 58th International Midwest Symposium on Circuits and Systems, 2015

Identifying Connectome Module Patterns via New Balanced Multi-graph Normalized Cut.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Integrated Visualization of Human Brain Connectome Data.
Proceedings of the Brain Informatics and Health - 8th International Conference, 2015

GN-SCCA: GraphNet Based Sparse Canonical Correlation Analysis for Brain Imaging Genetics.
Proceedings of the Brain Informatics and Health - 8th International Conference, 2015

2014
Identifying the Neuroanatomical Basis of Cognitive Impairment in Alzheimer's Disease by Correlation- and Nonlinearity-Aware Sparse Bayesian Learning.
IEEE Trans. Medical Imaging, 2014

Transcriptome-guided amyloid imaging genetic analysis via a novel structured sparse learning algorithm.
Bioinform., 2014

Computational genetics analysis of grey matter density in Alzheimer's disease.
BioData Min., 2014

Accelerating Sparse Canonical Correlation Analysis for Large Brain Imaging Genetics Data.
Proceedings of the Annual Conference of the Extreme Science and Engineering Discovery Environment, 2014

Building a surface atlas of hippocampal subfields from MRI scans using FreeSurfer, FIRST and SPHARM.
Proceedings of the IEEE 57th International Midwest Symposium on Circuits and Systems, 2014

Human Connectome Module Pattern Detection Using a New Multi-graph MinMax Cut Model.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

A Novel Structure-Aware Sparse Learning Algorithm for Brain Imaging Genetics.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Joint identification of imaging and proteomics biomarkers of Alzheimer's disease using network-guided sparse learning.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Data synthesis and method evaluation for brain imaging genetics.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

2013
Robust estimation of fractal measures for characterizing the structural complexity of the human brain: Optimization and reproducibility.
NeuroImage, 2013

Network-Guided Sparse Learning for Predicting Cognitive Outcomes from MRI Measures.
Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

PARP1 Gene Variation and Microglial Activity on [11C]PBR28 PET in Older Adults at Risk for Alzheimer's Disease.
Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

A Graph-Based Integration of Multimodal Brain Imaging Data for the Detection of Early Mild Cognitive Impairment (E-MCI).
Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

A New Sparse Simplex Model for Brain Anatomical and Genetic Network Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Genetic Clustering on the Hippocampal Surface for Genome-Wide Association Studies.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Structural Brain Network Constrained Neuroimaging Marker Identification for Predicting Cognitive Functions.
Proceedings of the Information Processing in Medical Imaging, 2013

Exploring Interestingness in a Computational Evolution System for the Genome-Wide Genetic Analysis of Alzheimer's Disease.
Proceedings of the Genetic Programming Theory and Practice XI [GPTP 2013, 2013

2012
Erratum to "A large scale multivariate parallel ICA method reveals novel imaging-genetic relationships for Alzheimer's Disease in the ADNI cohort" [Neuroimage 60/3(2012) 1608-1621].
NeuroImage, 2012

A large scale multivariate parallel ICA method reveals novel imaging-genetic relationships for Alzheimer's disease in the ADNI cohort.
NeuroImage, 2012

Characteristics and variability of structural networks derived from diffusion tensor imaging.
NeuroImage, 2012

From phenotype to genotype: an association study of longitudinal phenotypic markers to Alzheimer's disease relevant SNPs.
Bioinform., 2012

Identifying disease sensitive and quantitative trait-relevant biomarkers from multidimensional heterogeneous imaging genetics data via sparse multimodal multitask learning.
Bioinform., 2012

Identifying quantitative trait loci via group-sparse multitask regression and feature selection: an imaging genetics study of the ADNI cohort.
Bioinform., 2012

Pattern Visualization of Human Connectome Data.
Proceedings of the 14th Eurographics Conference on Visualization, 2012

High-Order Multi-Task Feature Learning to Identify Longitudinal Phenotypic Markers for Alzheimer's Disease Progression Prediction.
Proceedings of the Advances in Neural Information Processing Systems 25: 26th Annual Conference on Neural Information Processing Systems 2012. Proceedings of a meeting held December 3-6, 2012

Multimodal Neuroimaging Predictors for Cognitive Performance Using Structured Sparse Learning.
Proceedings of the Multimodal Brain Image Analysis - Second International Workshop, 2012

Sparse Bayesian multi-task learning for predicting cognitive outcomes from neuroimaging measures in Alzheimer's disease.
Proceedings of the 2012 IEEE Conference on Computer Vision and Pattern Recognition, 2012

2011
Regional reproducibility of pulsed arterial spin labeling perfusion imaging at 3T.
NeuroImage, 2011

Voxelwise gene-wide association study (vGeneWAS): Multivariate gene-based association testing in 731 elderly subjects.
NeuroImage, 2011

Identifying AD-Sensitive and Cognition-Relevant Imaging Biomarkers via Joint Classification and Regression.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Hippocampal Surface Mapping of Genetic Risk Factors in AD via Sparse Learning Models.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Identifying Neuroimaging and Proteomic Biomarkers for MCI and AD via the Elastic Net.
Proceedings of the Multimodal Brain Image Analysis, First International Workshop, 2011

Sparse multi-task regression and feature selection to identify brain imaging predictors for memory performance.
Proceedings of the IEEE International Conference on Computer Vision, 2011

2010
Age-related neuroinflammation in non-demented elderly adults: Preliminary findings with the TSPO ligand [11C]PBR28.
NeuroImage, 2010

Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.
NeuroImage, 2010

Voxelwise genome-wide association study (vGWAS).
NeuroImage, 2010

Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.
NeuroImage, 2010

An interactive user interface system for Alzheimer's intervention.
Proceedings of the 3rd International Conference on Pervasive Technologies Related to Assistive Environments, 2010

Sparse Bayesian Learning for Identifying Imaging Biomarkers in AD Prediction.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

2009
Fourier method for large-scale surface modeling and registration.
Comput. Graph., 2009

Data synthesis and tool development for exploring imaging genomic patterns.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

2007
A Novel Surface Registration Algorithm With Biomedical Modeling Applications.
IEEE Trans. Inf. Technol. Biomed., 2007

Efficient Registration of 3D SPHARM Surfaces.
Proceedings of the Fourth Canadian Conference on Computer and Robot Vision (CRV 2007), 2007

Morphometric Analysis of Hippocampal Shape in Mild Cognitive Impairment: An Imaging Genetics Study.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2004
A surface-based approach for classification of 3D neuroanatomic structures.
Intell. Data Anal., 2004

Shape-based discriminative analysis of combined bilateral hippocampi using multiple object alignment.
Proceedings of the Medical Imaging 2004: Image Processing, 2004

Extraction of Discriminative Functional MRI Activation Patterns and an Application to Alzheimer's Disease.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

2003
A Spatio-temporal Multi-modal Data Management and Analysis Environment for Tracking MS Lesions.
Proceedings of the 15th International Conference on Scientific and Statistical Database Management (SSDBM 2003), 2003

Hippocampal shape analysis: surface-based representation and classification.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Quantifying Evolving Processes in Multimodal 3D Medical Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Morphometric Analysis of Brain Structures for Improved Discrimination.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Patient Classification of fMRI Activation Maps.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

2002
MetaDL: A Digital Library of Metadata for Sensitive or Complex Research Data.
Proceedings of the Research and Advanced Technology for Digital Libraries, 2002

2001
Differential Working Memory Load Effects after Mild Traumatic Brain Injury.
NeuroImage, 2001

1998
Stimulus Tracking in Functional Magnetic Resonance Imaging (fMRI).
Proceedings of the 6th ACM International Conference on Multimedia '98, 1998


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