Andrew J. Bordner

According to our database1, Andrew J. Bordner authored at least 11 papers between 2003 and 2012.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2012
Predicting the effects of amino acid replacements in peptide hormones on their binding affinities for class B GPCRs and application to the design of secretin receptor antagonists.
J. Comput. Aided Mol. Des., 2012

2011
Efficient molecular mechanics simulations of the folding, orientation, and assembly of peptides in lipid bilayers using an implicit atomic solvation model.
J. Comput. Aided Mol. Des., 2011

2010
MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes.
BMC Bioinform., 2010

Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model.
BMC Bioinform., 2010

Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design.
BMC Bioinform., 2010

Kernelling Method for Identifying Near-Native Protein Decoy Structures.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

2009
Predicting protein-protein binding sites in membrane proteins.
BMC Bioinform., 2009

2008
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces.
BMC Bioinform., 2008

Predicting small ligand binding sites in proteins using backbone structure.
Bioinform., 2008

2005
REVCOM: a robust Bayesian method for evolutionary rate estimation.
Bioinform., 2005

2003
Boundary element solution of the linear Poisson-Boltzmann equation and a multipole method for the rapid calculation of forces on macromolecules in solution.
J. Comput. Chem., 2003


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