Andrew E. Teschendorff

According to our database, Andrew E. Teschendorff authored at least 33 papers between 2005 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.

Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Jingyao Zeng, Yadong Zhang, Yunfei Shang, Jialin Mai, Shuo Shi, Mingming Lu, Congfan Bu, Zhewen Zhang, Zhenglin Du, Yinying Wang, Hongen Kang, Tianyi Xu, Lili Hao, Peilin Jia, Shuai Jiang, Qiheng Qian, Tongtong Zhu, Wenting Zong, Tong Jin, Yuansheng Zhang, Dong Zou, Qiang Du, Changrui Feng, Lina Ma, Sisi Zhang, Anke Wang, Lili Dong, Yanqing Wang, Wan Liu, Xing Yan, Yunchao Ling, Zhihua Zhou, Wang Kang, Tao Zhang, Shuai Ma, Haoteng Yan, Zunpeng Liu, Zejun Ji, Yusheng Cai, Si Wang, Moshi Song, Jie Ren, Qi Zhou, Jing Qu, Weiqi Zhang, Guanghui Liu, Xu Chen, Tingting Chen, Yanling Sun, Caixia Yu, Bixia Tang, Junwei Zhu, Shuang Zhai, Yubin Sun, Qiancheng Chen, Xiaoyu Yang, Xin Zhang, Zhengqi Sang, Yonggang Wang, Yilin Zhao, Huanxin Chen, Li Lan, Yingke Ma, Yaokai Jia, Xinchang Zheng, Meili Chen, Ming Chen, Guangyi Niu, Rong Pan, Wei Jing, Jian Sang, Chang Liu, Yujia Xiong, Mochen Zhang, Guoliang Wang, Lizhi Yi, Wei Zhao, Song Wu, Zhuang Xiong, Rujiao Li, Zheng Gong, Lin Liu, Zhao Li, Qianpeng Li, Sicheng Luo, Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Yanyan Li, Fei Yang, Mengwei Li, Zhaohua Li, Dongmei Tian, Xiaonan Liu, Cuiping Li, Xufei Teng, Shuhui Song, Yang Zhang, Ruru Chen, Rongqin Zhang, Feng Xu, Yifan Wang, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yungang He, Zhen Yang, Lun Li, Na Li, Ying Cui, Guangya Duan, Gangao Wu, Tianhao Huang, Enhui Jin, Hailong Kang, Zhonghuang Wang, Hua Chen, Mingkun Li, Wanshan Ning, Yu Xue, Yanhu Liu, Qijun Zhou, Xingyan Liu, Longlong Zhang, Bingyu Mao, Shihua Zhang, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Haichun Jing, Yitong Pan, Leisheng Shi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Dan Liu, Chi Zhang, Zheng Zhao, Tao Jiang, Wanying Wu, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Shaofeng Lin, Chuijie Liu, Anyuan Guo, Hao Yuan, Tianhan Su, Yong E. Zhang, Yincong Zhou, Guoji Guo, Shanshan Fu, Xiaodan Tan, Weizhi Zhang, Mei Luo, Yubin Xie, Chenwei Wang, Xingyu Liao, Xin Gao, Jianxin Wang, Guiyan Xie, Chunhui Yuan, Feng Tian, Dechang Yang, Ge Gao, Dachao Tang, Wenyi Wu, Yujie Gou, Cheng Han, Qinghua Cui, Xiangshang Li, Chuan-Yun Li, Xiaotong Luo

Nucleic Acids Res., 2022

dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms.

Feng Xu, Yifan Wang, Yunchao Ling, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yi Zhao, Haitao Zhao, Yungang He, Guoqing Zhang, Zhen Yang

Genom. Proteom. Bioinform., 2022

2021

Ultra-fast scalable estimation of single-cell differentiation potency from scRNA-Seq data.

Andrew E. Teschendorff, Alok K. Maity, Xue Hu, Weiyan Chen, Matthias Lechner

Bioinform., 2021

2020

EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI.

Shijie C. Zheng, Charles E. Breeze, Stephan Beck, Danyue Dong, Tianyu Zhu, Liang-Xiao Ma, Wei Ye, Guoqing Zhang, Andrew E. Teschendorff

Bioinform., 2020

Quantifying Waddington's epigenetic landscape: a comparison of single-cell potency measures.

Jifan Shi, Andrew E. Teschendorff, Weiyan Chen, Luonan Chen, Tiejun Li

Briefings Bioinform., 2020

2019

ebGSEA: an improved Gene Set Enrichment Analysis method for Epigenome-Wide-Association Studies.

Danyue Dong, Yuan Tian, Shijie C. Zheng, Andrew E. Teschendorff

Bioinform., 2019

eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data.

Charles E. Breeze, Alex P. Reynolds, Jenny van Dongen, Ian Dunham, John Lazar, Shane J. Neph, Jeff Vierstra, Guillaume Bourque, Andrew E. Teschendorff, John A. Stamatoyannopoulos, Stephan Beck

Bioinform., 2019

Accounting for differential variability in detecting differentially methylated regions.

Ya Wang, Andrew E. Teschendorff, Martin Widschwendter, Shuang Wang

Briefings Bioinform., 2019

2018

Tumor origin detection with tissue-specific miRNA and DNA methylation markers.

Wei Tang, Shixiang Wan, Zhen Yang, Andrew E. Teschendorff, Quan Zou

Bioinform., 2018

2017

dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers.

Zhen Yang, Liangcai Wu, Anqiang Wang, Wei Tang, Yi Zhao, Haitao Zhao, Andrew E. Teschendorff

Nucleic Acids Res., 2017

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.

Andrew E. Teschendorff, Charles E. Breeze, Shijie C. Zheng, Stephan Beck

BMC Bioinform., 2017

ChAMP: updated methylation analysis pipeline for Illumina BeadChips.

Yuan Tian, Tiffany J. Morris, Amy P. Webster, Zhen Yang, Stephan Beck, Andrew Feber, Andrew E. Teschendorff

Bioinform., 2017

2016

Stochastic epigenetic outliers can define field defects in cancer.

Andrew E. Teschendorff, Allison Jones, Martin Widschwendter

BMC Bioinform., 2016

Spatiotemporal ICA improves the selection of differentially expressed genes.

Emilie Renard, Andrew E. Teschendorff, Pierre-Antoine Absil

Proceedings of the 24th European Symposium on Artificial Neural Networks, 2016

2015

Intra-Tumour Signalling Entropy Determines Clinical Outcome in Breast and Lung Cancer.

Christopher R. S. Banerji, Simone Severini, Carlos Caldas, Andrew E. Teschendorff

PLoS Comput. Biol., 2015

Variational Bayesian Matrix Factorization for Bounded Support Data.

Zhanyu Ma, Andrew E. Teschendorff, Arne Leijon, Yuanyuan Qiao, Honggang Zhang, Jun Guo

IEEE Trans. Pattern Anal. Mach. Intell., 2015

2014

The Dynamics of DNA Methylation Covariation Patterns in Carcinogenesis.

Andrew E. Teschendorff, Xiaoping Liu, Helena Carén, Steve M. Pollard, Stephan Beck, Martin Widschwendter, Luonan Chen

PLoS Comput. Biol., 2014

Data integration in the era of omics: current and future challenges.

David Gomez-Cabrero, Imad Abugessaisa, Dieter Maier, Andrew E. Teschendorff, Matthias Merkenschlager, Andreas Gisel, Esteban Ballestar, Erik Bongcam-Rudloff, Ana Conesa, Jesper Tegnér

BMC Syst. Biol., 2014

ChAMP: 450k Chip Analysis Methylation Pipeline.

Tiffany J. Morris, Lee M. Butcher, Andrew Feber, Andrew E. Teschendorff, Ankur R. Chakravarthy, Tomasz K. Wojdacz, Stephan Beck

Bioinform., 2014

A systems-level integrative framework for genome-wide DNA methylation and gene expression data identifies differential gene expression modules under epigenetic control.

Yinming Jiao, Martin Widschwendter, Andrew E. Teschendorff

Bioinform., 2014

Capturing confounding sources of variation in DNA methylation data by spatiotemporal independent component analysis.

Emilie Renard, Andrew E. Teschendorff, Pierre-Antoine Absil

Proceedings of the 22th European Symposium on Artificial Neural Networks, 2014

2013

A variational Bayes beta Mixture Model for Feature Selection in DNA methylation Studies.

Zhanyu Ma, Andrew E. Teschendorff

J. Bioinform. Comput. Biol., 2013

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.

Andrew E. Teschendorff, Francesco Marabita, Matthias Lechner, Thomas E. Bartlett, Jesper Tegnér, David Gomez-Cabrero, Stephan Beck

Bioinform., 2013

2012

A comparison of feature selection and classification methods in DNA methylation studies using the Illumina Infinium platform.

Joanna Zhuang, Martin Widschwendter, Andrew E. Teschendorff

BMC Bioinform., 2012

Differential variability improves the identification of cancer risk markers in DNA methylation studies profiling precursor cancer lesions.

Andrew E. Teschendorff, Martin Widschwendter

Bioinform., 2012

2011

DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference.

Yan Jiao, Katherine Lawler, Gargi S. Patel, Arnie Purushotham, Annete F. Jones, Anita Grigoriadis, Andrew Tutt, Tony C. Ng, Andrew E. Teschendorff

BMC Bioinform., 2011

Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies.

Andrew E. Teschendorff, Joanna Zhuang, Martin Widschwendter

Bioinform., 2011

2010

Increased entropy of signal transduction in the cancer metastasis phenotype.

Andrew E. Teschendorff, Simone Severini

BMC Syst. Biol., 2010

2009

Gene expression data analysis using spatiotemporal blind source separation.

Matthieu Sainlez, Pierre-Antoine Absil, Andrew E. Teschendorff

Proceedings of the 17th European Symposium on Artificial Neural Networks, 2009

2007

Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis.

Andrew E. Teschendorff, Michel Journée, Pierre-Antoine Absil, Rodolphe Sepulchre, Carlos Caldas

PLoS Comput. Biol., 2007

Geometric Optimization Methods for Independent Component Analysis Applied on Gene Expression Data.

Michel Journée, Andrew E. Teschendorff, Pierre-Antoine Absil, Rodolphe Sepulchre

Proceedings of the IEEE International Conference on Acoustics, 2007

2006

PACK: Profile Analysis using Clustering and Kurtosis to find molecular classifiers in cancer.

Andrew E. Teschendorff, Ali Naderi, Nuno L. Barbosa-Morais, Carlos Caldas

Bioinform., 2006

2005

A variational Bayesian mixture modelling framework for cluster analysis of gene-expression data.

Andrew E. Teschendorff, Yanzhong Wang, Nuno L. Barbosa-Morais, James D. Brenton, Carlos Caldas

Bioinform., 2005