Andrew D. Farmer

According to our database, Andrew D. Farmer authored at least 18 papers between 1997 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes.

Alan M. Cleary, Andrew D. Farmer

Nucleic Acids Res., July, 2023

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium.

Jennifer L. Clarke, Laurel D. Cooper, Monica F. Poelchau, Tanya Z. Berardini, Justin Elser, Andrew D. Farmer, Stephen P. Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T. Nelson, Rie Sadohara, Peter Selby, Anne E. Thessen, Brandon Whitehead, Taner Z. Sen

Database J. Biol. Databases Curation, 2023

2022

Ten simple rules for developing visualization tools in genomics.

Éloi Durant, Mathieu Rouard, Eric W. Ganko, Cédric Muller, Alan M. Cleary, Andrew D. Farmer, Matthieu G. Conte, François Sabot

PLoS Comput. Biol., November, 2022

2018

Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny.

Alan M. Cleary, Andrew D. Farmer

Bioinform., 2018

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew D. Farmer, Stephen P. Ficklin, David M. Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main

Database J. Biol. Databases Curation, 2018

2016

Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family.

Sudhansu Dash, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Alan M. Cleary, Wei Huang, Scott R. Kalberer, Vijay Karingula, Alex G. Rice, Jugpreet Singh, Pooja E. Umale, Nathan T. Weeks, Andrew P. Wilkey, Andrew D. Farmer, Steven B. Cannon

Nucleic Acids Res., 2016

Small RNA profiles in soybean primary root tips under water deficit.

Yun Zheng, Vandana Hivrale, Xiaotuo Zhang, Babu Valliyodan, Christine Lelandais-Brière, Andrew D. Farmer, Gregory D. May, Martin Crespi, Henry T. Nguyen, Ramanjulu Sunkar

BMC Syst. Biol., 2016

2006

Phytophthora functional genomics database (PFGD): functional genomics of <i>phytophthora</i>-plant interactions.

Kamal Gajendran, Michael D. Gonzales, Andrew D. Farmer, Eric Archuleta, Joe Win, Mark E. Waugh, Sophien Kamoun

Nucleic Acids Res., 2006

2005

The Legume Information System (LIS): an integrated information resource for comparative legume biology.

Michael D. Gonzales, Eric Archuleta, Andrew D. Farmer, Kamal Gajendran, David M. Grant, Randy C. Shoemaker, William D. Beavis, Mark E. Waugh

Nucleic Acids Res., 2005

2001

The Medicago Genome Initiative: a model legume database.

Callum J. Bell, Richard A. Dixon, Andrew D. Farmer, H. Raul Flores, Jeff T. Inman, Robert A. Gonzales, Maria J. Harrison, Nancy L. Paiva, Angela D. Scott, Jennifer W. Weller, Gregory D. May

Nucleic Acids Res., 2001

An integration platform for heterogeneous bioinformatics software components.

Adam C. Siepel, Andrew N. Tolopko, Andrew D. Farmer, Peter A. Steadman, Faye D. Schilkey, B. Dawn Perry, William D. Beavis

IBM Syst. J., 2001

GeneX: An Open Source gene expression database and integrated tool set.

Harry Mangalam, Jason E. Stewart, Jiaye Zhou, Karen Schlauch, Mark E. Waugh, Guanghong Chen, Andrew D. Farmer, Greg Colello, Jennifer W. Weller

IBM Syst. J., 2001

ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources.

Adam C. Siepel, Andrew D. Farmer, Andrew N. Tolopko, Mingzhe Zhuang, Pedro Mendes, William D. Beavis, Bruno W. S. Sobral

Bioinform., 2001

2000

The Genome Sequence DataBase.

Carol Harger, Guanghong Chen, Andrew D. Farmer, Wen Huang, Jeff T. Inman, Donald Kiphart, Faye D. Schilkey, M. P. Skupski, Jennifer W. Weller

Nucleic Acids Res., 2000

1999

The Genome Sequence DataBase: towards an integrated functional genomics resource.

M. P. Skupski, M. Booker, Andrew D. Farmer, M. Harpold, Wen Huang, Jeff T. Inman, Donald Kiphart, C. Kodira, S. Root, Faye D. Schilkey, Jolene Schwertfeger, Adam C. Siepel, David Stamper, Nina Thayer, R. Thompson, Jennifer R. Wortman, J. J. Zhuang, Carol Harger

Nucleic Acids Res., 1999

Establishing a method of vector contamination identification in database sequences.

G. A. Seluja, Andrew D. Farmer, Mia McLeod, Carol Harger, Peter A. Schad

Bioinform., 1999

1998

The Genome Sequence DataBase (GSDB): improving data quality and data access.

Carol Harger, M. P. Skupski, J. Bingham, Andrew D. Farmer, S. Hoisie, Peter T. Hraber, Donald Kiphart, L. Krakowski, Mia McLeod, Jolene Schwertfeger, G. A. Seluja, Adam C. Siepel, Gautam Singh, David Stamper, Peter A. Steadman, Nina Thayer, R. Thompson, P. Wargo, Mark E. Waugh, J. J. Zhuang, Peter A. Schad

Nucleic Acids Res., 1998

1997

The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes.

Carol Harger, Marian Skupski, Ethan Allen, Christopher Clark, David Crowley, Emily Dickinson, David Easley, Ada Espinosa-Lujan, Andrew D. Farmer, Chris A. Fields, Leandrita Flores, Lynn Harris, Gifford Keen, Maurice Manning, Michael P. McLeod, John O'Neill, Maria Pumilia, Rhonda Reinert, David Rider, John Rohrlich, Yolanda Romero, Jolene Schwertfeger, Gustavo Seluja, Adam C. Siepel, Gautam Singh, Linda Smyth, David Stamper, Judy Stein, Randy Suggs, Rajini Takkallapalli, Nina Thayer, Gary Thompson, Colleen Walsh, Frederick Wedgeworth III, Peter A. Schad

Nucleic Acids Res., 1997