Andrej Sali

Orcid: 0000-0003-0435-6197

According to our database1, Andrej Sali authored at least 52 papers between 1995 and 2023.

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Bibliography

2023
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.
Nucleic Acids Res., January, 2023

2021
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.
Nucleic Acids Res., 2021

2018
Integrative structure and functional anatomy of a nuclear pore complex.
Nat., 2018

2017
Computational Discovery and Experimental Validation of Inhibitors of the Human Intestinal Transporter OATP2B1.
J. Chem. Inf. Model., June, 2017

2016
FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles.
Nucleic Acids Res., 2016

Clustering of disulfide-rich peptides provides scaffolds for hit discovery by phage display: application to interleukin-23.
BMC Bioinform., 2016

2015
Prediction of Functionally Important Phospho-Regulatory Events in <i>Xenopus laevis</i> Oocytes.
PLoS Comput. Biol., 2015

2014
A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis.
PLoS Comput. Biol., 2014

ModBase, a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res., 2014

Prediction of Substrates for Glutathione Transferases by Covalent Docking.
J. Chem. Inf. Model., 2014

2013
Target Prediction for an Open Access Set of Compounds Active against <i>Mycobacterium tuberculosis</i>.
PLoS Comput. Biol., 2013

Optimized atomic statistical potentials: assessment of protein interfaces and loops.
Bioinform., 2013

2012
Global landscape of HIV-human protein complexes.
Nat., 2012

A method for integrative structure determination of protein-protein complexes.
Bioinform., 2012

SALIGN: a web server for alignment of multiple protein sequences and structures.
Bioinform., 2012

2011
MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map.
Nucleic Acids Res., 2011

ModBase, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Res., 2011

Statistical Potential for Modeling and Ranking of Protein-Ligand Interactions.
J. Chem. Inf. Model., 2011

2010
The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures.
PLoS Comput. Biol., 2010

FoXS: a web server for rapid computation and fitting of SAXS profiles.
Nucleic Acids Res., 2010

Prediction of protease substrates using sequence and structure features.
Bioinform., 2010

2009
Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models.
PLoS Comput. Biol., 2009

MODBASE, a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res., 2009

Molecular Docking Screens Using Comparative Models of Proteins.
J. Chem. Inf. Model., 2009

ModLink+: improving fold recognition by using protein-protein interactions.
Bioinform., 2009

2008
Evolutionarily Conserved Substrate Substructures for Automated Annotation of Enzyme Superfamilies.
PLoS Comput. Biol., 2008

Prediction of enzyme function by combining sequence similarity and protein interactions.
BMC Bioinform., 2008

Integrative Structure Determination of Protein Assemblies by Satisfaction of Spatial Restraints.
Proceedings of the Protein-protein Interactions and Networks: Identification, 2008

2007
Functional Impact of Missense Variants in BRCA1 Predicted by Supervised Learning.
PLoS Comput. Biol., 2007

Stereochemical Criteria for Prediction of the Effects of Proline Mutations on Protein Stability.
PLoS Comput. Biol., 2007

Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions.
PLoS Comput. Biol., 2007

DBAli tools: mining the protein structure space.
Nucleic Acids Res., 2007

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.
BMC Bioinform., 2007

Protein Interactions and Disease Phenotypes in the ABC Transporter Superfamily.
Proceedings of the Biocomputing 2007, 2007

2006
Structural Modeling of Protein Interactions by Analogy: Application to PSD-95.
PLoS Comput. Biol., 2006

MODBASE: a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res., 2006

2005
LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.
Bioinform., 2005

PIBASE: a comprehensive database of structurally defined protein interfaces.
Bioinform., 2005

Improving Functional Annotation of Non-Synonomous SNPs with Information Theory.
Proceedings of the Biocomputing 2005, 2005

2004
MODBASE, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Res., 2004

2003
EVA: evaluation of protein structure prediction servers.
Nucleic Acids Res., 2003

Tools for comparative protein structure modeling and analysis.
Nucleic Acids Res., 2003

ModView, visualization of multiple protein sequences and structures.
Bioinform., 2003

ModLoop: automated modeling of loops in protein structures.
Bioinform., 2003

2002
MODBASE, a database of annotated comparative protein structure models.
Nucleic Acids Res., 2002

LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures.
Bioinform., 2002

2001
DBAli: a database of protein structure alignments.
Bioinform., 2001

EVA: continuous automatic evaluation of protein structure prediction servers.
Bioinform., 2001

The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA).
Bioinform., 2001

2000
MODBASE, a database of annotated comparative protein structure models.
Nucleic Acids Res., 2000

1999
The Second Georgia Tech International Conference on Bioinformatics: Sequence, Structure and Function (November 11-14, 1999, Atlanta, Georgia, USA).
Bioinform., 1999

1995
Thermodynamics and kinetics of protein folding.
Proceedings of the Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding, 1995


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