Andreas Wilke

According to our database, Andreas Wilke authored at least 29 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Exascale Workflow Applications and Middleware: An ExaWorks Retrospective.

Aymen Alsaadi, Mihael Hategan-Marandiuc, Ketan Maheshwari, André Merzky, Mikhail Titov, Matteo Turilli, Andreas Wilke, Justin M. Wozniak, Kyle Chard, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney

CoRR, 2024

Assessing Reusability of Deep Learning-Based Monotherapy Drug Response Prediction Models Trained with Omics Data.

Jamie C. Overbeek, Alexander Partin, Thomas S. Brettin, Nicholas Chia, Oleksandr Narykov, Priyanka Vasanthakumari, Andreas Wilke, Yitan Zhu, Austin Clyde, Sara Jones, Rohan Gnanaolivu, Yuanhang Liu, Jun Jiang, Chen Wang, Carter Knutson, Andrew D. McNaughton, Neeraj Kumar, Gayara Demini Fernando, Souparno Ghosh, Cesar Sanchez-Villalobos, Ruibo Zhang, Ranadip Pal, M. Ryan Weil, Rick L. Stevens

CoRR, 2024

ExaWorks Software Development Kit: A Robust and Scalable Collection of Interoperable Workflow Technologies.

Matteo Turilli, Mihael Hategan-Marandiuc, Mikhail Titov, Ketan Maheshwari, Aymen Alsaadi, André Merzky, Ramon Arambula, Mikhail Zakharchanka, Matt Cowan, Justin M. Wozniak, Andreas Wilke, Ozgur Ozan Kilic, Kyle Chard, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney

CoRR, 2024

2023

An Automation Framework for Comparison of Cancer Response Models Across Configurations.

Justin M. Wozniak, Rajeev Jain, Andreas Wilke, Rylie Weaver, Alexander Partin, Thomas S. Brettin, Rick Stevens

Proceedings of the 19th IEEE International Conference on e-Science, 2023

PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs.

Mihael Hategan-Marandiuc, André Merzky, Nicholson T. Collier, Ketan Maheshwari, Jonathan Ozik, Matteo Turilli, Andreas Wilke, Justin M. Wozniak, Kyle Chard, Ian T. Foster, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney

Proceedings of the 19th IEEE International Conference on e-Science, 2023

2020

Fingerprinting Analog IoT Sensors for Secret-Free Authentication.

Felix Lorenz, Lauritz Thamsen, Andreas Wilke, Ilja Behnke, Jens Waldmüller-Littke, Ilya Komarov, Odej Kao, Manfred Paeschke

Proceedings of the 29th International Conference on Computer Communications and Networks, 2020

The Relevance of Subjective Benefits in Risky Choice Across ten Domains of Life.

Jana Jarecki, Andreas Wilke

Proceedings of the 42th Annual Meeting of the Cognitive Science Society, 2020

2019

Ensuring Security & Trust in a Post-Quantum Environment.

Manfred Paeschke, Walter Fumy, Andreas Wilke

Datenschutz und Datensicherheit, 2019

The MG-RAST API explorer: an on-ramp for RESTful query composition.

Tobias Paczian, William L. Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer

BMC Bioinform., 2019

MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis.

Folker Meyer, Saurabh Bagchi, Somali Chaterji, Wolfgang Gerlach, Ananth Grama, Travis Harrison, Tobias Paczian, William L. Trimble, Andreas Wilke

Briefings Bioinform., 2019

2018

On the way to research objects for environmental genomics (or metagenomics).

Folker Meyer, Robert D. Finn, Wolfgang Gerlach, Alex L. Mitchell, Travis Harrison, Andreas Wilke

Proceedings of Workshop on Research Objects (RO2018), 2018

2016

The MG-RAST metagenomics database and portal in 2015.

Andreas Wilke, Jared Bischof, Wolfgang Gerlach, Elizabeth M. Glass, Travis Harrison, Kevin P. Keegan, Tobias Paczian, William L. Trimble, Saurabh Bagchi, Ananth Grama, Somali Chaterji, Folker Meyer

Nucleic Acids Res., 2016

2015

A RESTful API for Accessing Microbial Community Data for MG-RAST.

Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D'Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer

PLoS Comput. Biol., 2015

Container Orchestration for Scientific Workflows.

Wolfgang Gerlach, Wei Tang, Andreas Wilke, Dan Olson, Folker Meyer

Proceedings of the 2015 IEEE International Conference on Cloud Engineering, 2015

Shock: Active Storage for Multicloud Streaming Data Analysis.

Andreas Wilke, Wolfgang Gerlach, Travis Harrison, Tobias Paczian, Wei Tang, William L. Trimble, Jared Wilkening, Narayan Desai, Folker Meyer

Proceedings of the 2nd IEEE/ACM International Symposium on Big Data Computing, 2015

2014

Skyport: container-based execution environment management for multi-cloud scientific workflows.

Wolfgang Gerlach, Wei Tang, Kevin P. Keegan, Travis Harrison, Andreas Wilke, Jared Bischof, Mark D'Souza, Scott Devoid, Daniel E. Murphy-Olson, Narayan Desai, Folker Meyer

Proceedings of the 5th International Workshop on Data-Intensive Computing in the Clouds, 2014

Workload characterization for MG-RAST metagenomic data analytics service in the cloud.

Wei Tang, Jared Bischof, Narayan Desai, Kanak Mahadik, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer

Proceedings of the 2014 IEEE International Conference on Big Data (IEEE BigData 2014), 2014

2013

A scalable data analysis platform for metagenomics.

Wei Tang, Jared Wilkening, Narayan Desai, Wolfgang Gerlach, Andreas Wilke, Folker Meyer

Proceedings of the 2013 IEEE International Conference on Big Data (IEEE BigData 2013), 2013

2012

A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE.

Kevin P. Keegan, William L. Trimble, Jared Wilkening, Andreas Wilke, Travis Harrison, Mark D'Souza, Folker Meyer

PLoS Comput. Biol., 2012

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools.

Andreas Wilke, Travis Harrison, Jared Wilkening, Dawn Field, Elizabeth M. Glass, Nikos Kyrpides, Konstantinos Mavrommatis, Folker Meyer

BMC Bioinform., 2012

Short-read reading-frame predictors are not created equal: sequence error causes loss of signal.

William L. Trimble, Kevin P. Keegan, Mark D'Souza, Andreas Wilke, Jared Wilkening, Jack A. Gilbert, Folker Meyer

BMC Bioinform., 2012

2011

An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud.

Andreas Wilke, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer

Concurr. Comput. Pract. Exp., 2011

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG.

Suparna Mitra, Paul Rupek, Daniel C. Richter, Tim Urich, Jack A. Gilbert, Folker Meyer, Andreas Wilke, Daniel H. Huson

BMC Bioinform., 2011

Exploration and Exploitation in Memory Search Across the Lifespan.

Thomas T. Hills, Rui Mata, Andreas Wilke, Gregory R. Samanez-Larkin

Proceedings of the 33th Annual Meeting of the Cognitive Science Society, 2011

2009

Fishing for the Right Words: Decision Rules for Human Foraging Behavior in Internal Search Tasks.

Andreas Wilke, John M. C. Hutchinson, Peter M. Todd, Uwe Czienskowski

Cogn. Sci., 2009

Using clouds for metagenomics: A case study.

Jared Wilkening, Andreas Wilke, Narayan Desai, Folker Meyer

Proceedings of the 2009 IEEE International Conference on Cluster Computing, August 31, 2009

2008

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.

Folker Meyer, Daniel Paarmann, Mark D'Souza, Robert Olson, Elizabeth M. Glass, Michael Kubal, Tobias Paczian, Alexis A. Rodriguez, Rick Stevens, Andreas Wilke, Jared Wilkening, Robert A. Edwards

BMC Bioinform., 2008

2007

SAMPI: Protein Identification with Mass Spectra Alignments.

Hans-Michael Kaltenbach, Andreas Wilke, Sebastian Böcker

BMC Bioinform., 2007

2005

BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser.

Alexander Goesmann, Burkhard Linke, Daniela Bartels, Michael Dondrup, Lutz Krause, Heiko Neuweger, Sebastian Oehm, Tobias Paczian, Andreas Wilke, Folker Meyer

Nucleic Acids Res., 2005