Andra Waagmeester

According to our database, Andra Waagmeester authored at least 25 papers between 2012 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Ten quick tips for editing Wikidata.

Thomas Shafee, Daniel Mietchen, Tiago Lubiana, Dariusz Jemielniak, Andra Waagmeester

PLoS Comput. Biol., 2023

2022

Complex Portal 2022: new curation frontiers.

Birgit H. M. Meldal, Livia Perfetto, Colin W. Combe, Tiago Lubiana, João Vitor Ferreira Cavalcante, Hema Bye-A-Jee, Andra Waagmeester, Noemi del-Toro, Anjali Shrivastava, Elisabet Barrera, Edith D. Wong, Bernhard Mlecnik, Gabriela Bindea, Kalpana Panneerselvam, Egon L. Willighagen, Juri Rappsilber, Pablo Porras, Henning Hermjakob, Sandra E. Orchard

Nucleic Acids Res., 2022

2021

Ten simple rules for creating reusable pathway models for computational analysis and visualization.

Kristina Hanspers, Martina Kutmon, Susan L. Coort, Daniela Digles, Lauren J. Dupuis, Friederike Ehrhart, Finterly Hu, Elisson N. Lopes, Marvin Martens, Nhung Pham, Woosub Shin, Denise N. Slenter, Andra Waagmeester, Egon L. Willighagen, Laurent A. Winckers, Chris T. A. Evelo, Alexander R. Pico

PLoS Comput. Biol., 2021

WikiPathways: connecting communities.

Marvin Martens, Ammar Ammar, Anders Riutta, Andra Waagmeester, Denise N. Slenter, Kristina Hanspers, Ryan A. Miller, Daniela Digles, Elisson N. Lopes, Friederike Ehrhart, Lauren J. Dupuis, Laurent A. Winckers, Susan L. Coort, Egon L. Willighagen, Chris T. A. Evelo, Alexander R. Pico, Martina Kutmon

Nucleic Acids Res., 2021

2020

FAIR Principles: Interpretations and Implementation Considerations.

Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes

Data Intell., 2020

2019

ChlamBase: a curated model organism database for the Chlamydia research community.

Tim E. Putman, Kevin Hybiske, Derek Jow, Cyrus Afrasiabi, Sebastien Lelong, Marco Alvarado Cano, Gregory S. Stupp, Andra Waagmeester, Benjamin M. Good, Chunlei Wu, Andrew I. Su

Database J. Biol. Databases Curation, 2019

Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation.

Katherine Thornton, Harold Solbrig, Gregory S. Stupp, José Emilio Labra Gayo, Daniel Mietchen, Eric Prud'hommeaux, Andra Waagmeester

Proceedings of the Semantic Web - 16th International Conference, 2019

2018

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research.

Denise N. Slenter, Martina Kutmon, Kristina Hanspers, Anders Riutta, Jacob Windsor, Nuno Nunes, Jonathan Mélius, Elisa Cirillo, Susan L. Coort, Daniela Digles, Friederike Ehrhart, Pieter Giesbertz, Marianthi Kalafati, Marvin Martens, Ryan A. Miller, Kozo Nishida, Linda Rieswijk, Andra Waagmeester, Lars M. T. Eijssen, Chris T. A. Evelo, Alexander R. Pico, Egon L. Willighagen

Nucleic Acids Res., 2018

Wikidata as an intuitive resource towards semantic data modeling in data FAIRification.

Annika Jacobsen, Andra Waagmeester, Rajaram Kaliyaperumal, Gregory S. Stupp, Lynn M. Schriml, Mark Thompson, Andrew I. Su, Marco Roos

Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018

2017

WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.

Tim E. Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin M. Diesh, Nathan A. Dunn, Monica C. Munoz-Torres, Gregory S. Stupp, Chunlei Wu, Andrew I. Su, Benjamin M. Good

Database J. Biol. Databases Curation, 2017

The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop.

Claudio Carta, Marco Roos, Annika Jacobsen, Rajaram Kaliyaperumal, Mark Thompson, Mark D. Wilkinson, Ronald Cornet, Andra Waagmeester, David van Enckevort, Mascha Jansen, Luana Licata, Allegra Via, Domenica Taruscio

Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

2016

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources.

Andra Waagmeester, Martina Kutmon, Anders Riutta, Ryan A. Miller, Egon L. Willighagen, Chris T. A. Evelo, Alexander R. Pico

PLoS Comput. Biol., 2016

WikiPathways: capturing the full diversity of pathway knowledge.

Martina Kutmon, Anders Riutta, Nuno Nunes, Kristina Hanspers, Egon L. Willighagen, Anwesha Bohler, Jonathan Mélius, Andra Waagmeester, Sravanthi R. Sinha, Ryan A. Miller, Susan L. Coort, Elisa Cirillo, Bart Smeets, Chris T. A. Evelo, Alexander R. Pico

Nucleic Acids Res., 2016

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.

Tim E. Putman, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Chunlei Wu, Andrew I. Su, Benjamin M. Good

Database J. Biol. Databases Curation, 2016

Wikidata as a semantic framework for the Gene Wiki initiative.

Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Elvira Mitraka, Julia Turner, Tim E. Putman, Justin Leong, Chinmay Naik, Paul Pavlidis, Lynn M. Schriml, Benjamin M. Good, Andrew I. Su

Database J. Biol. Databases Curation, 2016

Linking Wikidata to the Rest of the Semantic Web.

Andra Waagmeester, Egon L. Willighagen, Núria Queralt Rosinach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim E. Putman, Julia Turner, Lynn M. Schriml, Paul Pavlidis, Andrew I. Su, Benjamin M. Good

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Opportunities and Challenges Presented by Wikidata in the Context of Biocuration.

Benjamin M. Good, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka, Timothy Putman, Andrew I. Su, Andra Waagmeester

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015

Wikidata: A Platform for Data Integration and Dissemination for the Life Sciences and Beyond.

Elvira Mitraka, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Lynn M. Schriml, Andrew I. Su, Benjamin M. Good

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2014

Applying linked data approaches to pharmacology: Architectural decisions and implementation.

Alasdair J. G. Gray, Paul Groth, Antonis Loizou, Sune Askjaer, Christian Y. A. Brenninkmeijer, Kees Burger, Christine Chichester, Chris T. A. Evelo, Carole A. Goble, Lee Harland, Steve Pettifer, Mark Thompson, Andra Waagmeester, Antony J. Williams

Semantic Web, 2014

Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices.

Marco Roos, Alasdair J. G. Gray, Andra Waagmeester, Mark Thompson, Rajaram Kaliyaperumal, Eelke van der Horst, Barend Mons, Mark D. Wilkinson

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

Scientific Lenses to Support Multiple Views over Linked Chemistry Data.

Colin R. Batchelor, Christian Y. A. Brenninkmeijer, Christine Chichester, Mark Davies, Daniela Digles, Ian Dunlop, Chris T. A. Evelo, Anna Gaulton, Carole A. Goble, Alasdair J. G. Gray, Paul Groth, Lee Harland, Karen Karapetyan, Antonis Loizou, John P. Overington, Steve Pettifer, Jon Steele, Robert Stevens, Valery Tkachenko, Andra Waagmeester, Antony J. Williams, Egon L. Willighagen

Proceedings of the Semantic Web - ISWC 2014, 2014

2013

The ChEMBL database as linked open data.

Egon L. Willighagen, Andra Waagmeester, Ola Spjuth, Peter Ansell, Antony J. Williams, Valery Tkachenko, Janna Hastings, Bin Chen, David J. Wild

J. Cheminformatics, 2013

2012

SemScape: Visualizating Semantic Web Data Landscapes with Cytoscape 3.0.

Andrea Splendiani, Andra Waagmeester, Carina Haupt, Helena F. Deus

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

The Pharmacology Workspace: A Platform for Drug Discovery.

Alasdair J. G. Gray, Sune Askjaer, Christian Y. A. Brenninkmeijer, Kees Burger, Christine Chichester, James M. Eales, Chris T. A. Evelo, Carole A. Goble, Paul Groth, Lee Harland, Antonis Loizou, Steve Pettifer, Rishi Ramgolam, Mark Thompson, Andra Waagmeester, Antony J. Williams

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Uncovering impacts: a case study in using altmetrics tools.

Jason Priem, Cristhian Parra, Heather A. Piwowar, Paul Groth, Andra Waagmeester

Proceedings of the 2nd Workshop on Semantic Publishing, 2012