Anders Krogh

According to our database, Anders Krogh authored at least 62 papers between 1989 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

A primer on synthetic health data.

Jennifer Anne Bartell, Sander Boisen Valentin, Anders Krogh, Henning Langberg, Martin Bøgsted

CoRR, 2024

2023

The Deep Generative Decoder: MAP estimation of representations improves modelling of single-cell RNA data.

Viktoria Schuster, Anders Krogh

Bioinform., September, 2023

2021

A Manifold Learning Perspective on Representation Learning: Learning Decoder and Representations without an Encoder.

Viktoria Schuster, Anders Krogh

Entropy, 2021

The deep generative decoder: Using MAP estimates of representations.

Viktoria Schuster, Anders Krogh

CoRR, 2021

2020

CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data.

Thilde Terkelsen, Anders Krogh, Elena Papaleo

PLoS Comput. Biol., 2020

2019

Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads.

Iñigo Prada-Luengo, Anders Krogh, Lasse Maretty, Birgitte Regenberg

BMC Bioinform., 2019

2018

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios.

Maria Luisa Matey-Hernandez, Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Mikkel Heide Schierup, Søren Brunak

BMC Bioinform., 2018

2017

Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors.

Mireya Plass, Simon H. Rasmussen, Anders Krogh

PLoS Comput. Biol., 2017

Sequencing and <i>de novo</i> assembly of 150 genomes from Denmark as a population reference.

Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Maria Luisa Matey-Hernandez, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Søren Brunak, Mikkel Heide Schierup

Nat., 2017

2014

Adaptable probabilistic mapping of short reads using position specific scoring matrices.

Peter Kerpedjiev, Jes Frellsen, Stinus Lindgreen, Anders Krogh

BMC Bioinform., 2014

2010

miRMaid: a unified programming interface for microRNA data resources.

Anders Jacobsen Skanderup, Anders Krogh, Sakari Kauppinen, Morten Lindow

BMC Bioinform., 2010

2009

Discovery of Regulatory Elements is Improved by a Discriminatory Approach.

Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh

PLoS Comput. Biol., 2009

CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information.

Lisa Bartoli, Piero Fariselli, Anders Krogh, Rita Casadio

Bioinform., 2009

2008

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.

Jan Christian Bryne, Eivind Valen, Man-Hung Eric Tang, Troels Torben Marstrand, Ole Winther, Isabelle da Piedade, Anders Krogh, Boris Lenhard, Albin Sandelin

Nucleic Acids Res., 2008

BayesMD: Flexible Biological Modeling for Motif Discovery.

Man-Hung Eric Tang, Anders Krogh, Ole Winther

J. Comput. Biol., 2008

Modeling promoter grammars with evolving hidden Markov models.

Kyoung-Jae Won, Albin Sandelin, Troels Torben Marstrand, Anders Krogh

Bioinform., 2008

2007

Intragenomic Matching Reveals a Huge Potential for miRNA-Mediated Regulation in Plants.

Morten Lindow, Anders Jacobsen Skanderup, Sanne Nygaard, Yuan Mang, Anders Krogh

PLoS Comput. Biol., 2007

Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server.

Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer

Nucleic Acids Res., 2007

An evolutionary method for learning HMM structure: prediction of protein secondary structure.

Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh

BMC Bioinform., 2007

Multiple alignment and structure prediction of non-coding RNA sequences.

Stinus Lindgreen, Paul P. Gardner, Anders Krogh

BMC Bioinform., 2007

MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.

Stinus Lindgreen, Paul P. Gardner, Anders Krogh

Bioinform., 2007

Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models.

Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh

Proceedings of the Bioinformatics Research and Development, First International Conference, 2007

2006

Evolving the structure of hidden Markov models.

Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh

IEEE Trans. Evol. Comput., 2006

Sampling Realistic Protein Conformations Using Local Structural Bias.

Thomas Hamelryck, John T. Kent, Anders Krogh

PLoS Comput. Biol., 2006

PONGO: a web server for multiple predictions of all-alpha transmembrane proteins.

Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio

Nucleic Acids Res., 2006

Automatic generation of gene finders for eukaryotic species.

Kasper Munch, Anders Krogh

BMC Bioinform., 2006

A hidden Markov model approach for determining expression from genomic tiling micro arrays.

Kasper Munch, Paul P. Gardner, Peter Arctander, Anders Krogh

BMC Bioinform., 2006

Measuring covariation in RNA alignments: physical realism improves information measures.

Stinus Lindgreen, Paul P. Gardner, Anders Krogh

Bioinform., 2006

2005

Large-scale prokaryotic gene prediction and comparison to genome annotation.

Pernille Nielsen, Anders Krogh

Bioinform., 2005

An HMM posterior decoder for sequence feature prediction that includes homology information.

Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

Evolving hidden Markov models for protein secondary structure prediction.

Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh

Proceedings of the IEEE Congress on Evolutionary Computation, 2005

2004

Training HMM structure with genetic algorithm for biological sequence analysis.

Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh

Bioinform., 2004

The Block Hidden Markov Model for Biological Sequence Analysis.

Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh

Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2004

2003

EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance.

Thomas Schou Larsen, Anders Krogh

BMC Bioinform., 2003

2002

Bias of Purine Stretches in Sequenced Chromosomes.

David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh

Comput. Chem., 2002

A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins.

Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

2001

ISMB 2001.

Søren Brunak, Anders Krogh

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

2000

A General Method for Combining Predictors Tested on Protein Secondary Structure Prediction.

Jakob V. Hansen, Anders Krogh

Proceedings of the Artificial Neural Networks in Medicine and Biology, 2000

1999

Hidden Neural Networks.

Anders Krogh, Søren Kamaric Riis

Neural Comput., 1999

1998

A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences.

Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

Prediction of Signal Peptides and Signal Anchors by a Hidden Markov Model.

Henrik Nielsen, Anders Krogh

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids

Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme J. Mitchison

Cambridge University Press, ISBN: 9780511790492, 1998

1997

Nonlinear backpropagation: doing backpropagation without derivatives of the activation function.

John A. Hertz, Anders Krogh, Benny Lautrup, Torsten Lehmann

IEEE Trans. Neural Networks, 1997

Two Methods for Improving Performance of a HMM and their Application for Gene Finding.

Anders Krogh

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

Hidden neural networks: a framework for HMM/NN hybrids.

Søren Kamaric Riis, Anders Krogh

Proceedings of the 1997 IEEE International Conference on Acoustics, 1997

1996

Improving Predicition of Protein Secondary Structure Using Structured Neural Networks and Multiple Sequence Alignments.

Søren Kamaric Riis, Anders Krogh

J. Comput. Biol., 1996

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology.

Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler

Comput. Appl. Biosci., 1996

Hidden Markov models for sequence analysis: extension and analysis of the basic method.

Richard Hughey, Anders Krogh

Comput. Appl. Biosci., 1996

1995

Learning with ensembles: How overfitting can be useful.

Peter Sollich, Anders Krogh

Proceedings of the Advances in Neural Information Processing Systems 8, 1995

Prediction of Beta Sheets in Proteins.

Anders Krogh, Søren Kamaric Riis

Proceedings of the Advances in Neural Information Processing Systems 8, 1995

Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA.

Anders Krogh, Graeme J. Mitchison

Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

Periodic Sequence Patterns in Human Exons.

Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh

Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

1994

Bounds on approximate steepest descent for likelihood maximization in exponential families.

Nicolò Cesa-Bianchi, Anders Krogh, Manfred K. Warmuth

IEEE Trans. Inf. Theory, 1994

Neural Network Ensembles, Cross Validation, and Active Learning.

Anders Krogh, Jesper Vedelsby

Proceedings of the Advances in Neural Information Processing Systems 7, 1994

Hidden Markov models for labeled sequences.

Anders Krogh

Proceedings of the 12th IAPR International Conference on Pattern Recognition, 1994

1993

A Quantitative Study Of Pruning By Optimal Brain Damage.

Jan Gorodkin, Lars Kai Hansen, Anders Krogh, Claus Svarer, Ole Winther

Int. J. Neural Syst., 1993

Hidden Markov Models for Human Genes.

Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh

Proceedings of the Advances in Neural Information Processing Systems 6, 1993

Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families.

Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, Kimmen Sjölander, David Haussler

Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993

1991

A Simple Weight Decay Can Improve Generalization.

Anders Krogh, John A. Hertz

Proceedings of the Advances in Neural Information Processing Systems 4, 1991

Introduction to the theory of neural computation.

John A. Hertz, Anders Krogh, Richard G. Palmer

The advanced book program 1, Addison-Wesley, ISBN: 0201515601, 1991

1990

Dynamics of Generalization in Linear Perceptrons.

Anders Krogh, John A. Hertz

Proceedings of the Advances in Neural Information Processing Systems 3, 1990

1989

A Cost Function for Internal Representations.

Anders Krogh, C. I. Thorbergsson, John A. Hertz

Proceedings of the Advances in Neural Information Processing Systems 2, 1989