Ana T. Freitas

Orcid: 0000-0002-2997-5990

Affiliations:
  • Instituto Superior Técnico, Lisbon, Portugal


According to our database1, Ana T. Freitas authored at least 36 papers between 2001 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Microbiome Classification in Colon Cancer Patients Using Chaos Game Representations and CNN Models.
Proceedings of the Bioinformatics and Biomedical Engineering, 2024

2023
CSA-MEM: Enhancing Circular DNA Multiple Alignment Through Text Indexing Algorithms.
Proceedings of the Bioinformatics Research and Applications - 19th International Symposium, 2023

2018
Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

2017
A Virtual Research Environment for the Oil and Gas Domain.
ERCIM News, 2017

2015
BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies.
Database J. Biol. Databases Curation, 2015

The semantic web in translational medicine: current applications and future directions.
Briefings Bioinform., 2015

2014
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in <i>Saccharomyces cerevisiae</i>.
Nucleic Acids Res., 2014

Data Management in Metagenomics: A Risk Management Approach.
Int. J. Digit. Curation, 2014

slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array.
Bioinform., 2014

2013
Enrichment analysis applied to disease prognosis.
J. Biomed. Semant., 2013

Parallel efficient aligner of pyrosequencing reads.
Proceedings of the 20th European MPI Users's Group Meeting, 2013

2012
Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches.
Bioinform., 2012

Toward a Translational Medicine Approach for Hypertrophic Cardiomyopathy.
Proceedings of the Information Technology in Bio- and Medical Informatics, 2012

2011
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in <i>Saccharomyces cerevisiae</i> through a web services interface.
Nucleic Acids Res., 2011

Quantitative Modeling of the <i>Saccharomyces cerevisiae</i> Flr1 regulatory Network Using an S-System Formalism.
J. Bioinform. Comput. Biol., 2011

Efficient alignment of pyrosequencing reads for re-sequencing applications.
BMC Bioinform., 2011

Quantitative Modeling the Saccharomyces cerevisiae FLR1 Regulatory Network Using an S-System Formalism.
Proceedings of the 2011 IEEE International Conference on Healthcare Informatics, 2011

2010
Unraveling Hypertrophic Cardiomyopathy Variability.
ERCIM News, 2010

Modeling and formal verification of biological regulatory networks: An integrative approach.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

Semantic characterization of hypertrophic cardiomyopathy disease.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

Using graph modularity analysis to identify transcription factor binding sites.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009
A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks.
BMC Bioinform., 2009

CSA: An efficient algorithm to improve circular DNA multiple alignment.
BMC Bioinform., 2009

2008
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in <i>Saccharomyces cerevisiae</i>.
Nucleic Acids Res., 2008

An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance.
BMC Bioinform., 2008

Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph.
Proceedings of the Bioinformatics Research and Applications, 2008

Temporal logic patterns for querying dynamic models of cellular interaction networks.
Proceedings of the ECCB'08 Proceedings, 2008

Temporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks.
Proceedings of the ECAI 2008, 2008

2006
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences.
IEEE ACM Trans. Comput. Biol. Bioinform., 2006

The YEASTRACT database: a tool for the analysis of transcription regulatory associations in <i>Saccharomyces cerevisiae</i>.
Nucleic Acids Res., 2006

MUSA: a parameter free algorithm for the identification of biologically significant motifs.
Bioinform., 2006

2005
A highly scalable algorithm for the extraction of CIS-regulatory regions.
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005

2004
Efficient Extraction of Structured Motifs Using Box-Links.
Proceedings of the String Processing and Information Retrieval, 2004

A parallel algorithm for the extraction of structured motifs.
Proceedings of the 2004 ACM Symposium on Applied Computing (SAC), 2004

2003
Implicit Resolution of the Chapman-Kolmogorov Equations for Sequential Circuits: An Application in Power Estimation.
Proceedings of the 2003 Design, 2003

2001
Circuit partitioning techniques for power estimation using the full set of input correlations.
Proceedings of the 2001 8th IEEE International Conference on Electronics, 2001


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