Ana Conesa

According to our database, Ana Conesa authored at least 35 papers between 2004 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases.

Tianyuan Liu, Pedro Salguero, Marko Petek, Carlos Martínez-Mira, Leandro Balzano-Nogueira, Ziva Ramsak, Lauren McIntyre, Kristina Gruden, Sonia Tarazona, Ana Conesa

Nucleic Acids Res., 2022

MultiBaC: an R package to remove batch effects in multi-omic experiments.

Manuel Ugidos, María José Nueda, José Manuel Prats-Montalbán, Alberto Ferrer, Ana Conesa, Sonia Tarazona

Bioinform., 2022

A roadmap for the functional annotation of protein families: a community perspective.

Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia N. Arighi, Jill Babor, Alex Bateman, Ian Blaby, Crysten Blaby-Haas, Alan J. Bridge, Stephen K. Burley, Stacey Cleveland, Lucy J. Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M. Gyori, Christopher S. Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D. Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler-Bauer, Maria Jesus Martin, Claire D. McWhite, Gaurav D. Moghe, Paul Monaghan, Anne Morgat, Christopher J. Mungall, Darren A. Natale, William C. Nelson, Seán I. O'Donoghue, Christine A. Orengo, Katherine H. O'Toole, Predrag Radivojac, Colbie Reed, Richard J. Roberts, Dmitri Rodionov, Irina A. Rodionova, Jeffrey DePons, Lana Saleh, Gloria M. Sheynkman, Françoise Thibaud-Nissen, Paul D. Thomas, Peter Uetz, David Vallenet, Erica Watson Carter, Peter Weigele, Valerie Wood, Elisha M. Wood-Charlson, Jin Xu

Database J. Biol. Databases Curation, 2022

2021

Undisclosed, unmet and neglected challenges in multi-omics studies.

Sonia Tarazona, Angeles Arzalluz-Luque, Ana Conesa

Nat. Comput. Sci., 2021

2019

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.

Camden Jansen, Ricardo N. Ramirez, Nicole C. El-Ali, David Gomez-Cabrero, Jesper Tegnér, Matthias Merkenschlager, Ana Conesa, Ali Mortazavi

PLoS Comput. Biol., 2019

A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies.

Gabriela Alejandra Merino, Ana Conesa, Elmer Andrés Fernández

Briefings Bioinform., 2019

2018

PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data.

Rafael Hernández-de-Diego, Sonia Tarazona, Carlos Martínez-Mira, Leandro Balzano-Nogueira, Pedro Furió-Tarí, Georgios Joannis Pappas Jr., Ana Conesa

Nucleic Acids Res., 2018

GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text.

Qile Zhu, Xiaolin Li, Ana Conesa, Cécile Pereira

Bioinform., 2018

Identification and visualization of differential isoform expression in RNA-seq time series.

María José Nueda, Jordi Martorell-Marugan, Cristina Martí, Sonia Tarazona, Ana Conesa

Bioinform., 2018

2017

The eBioKit, a stand-alone educational platform for bioinformatics.

Rafael Hernández-de-Diego, Etienne Pierre de Villiers, Tomas Klingström, Hadrien Gourlé, Ana Conesa, Erik Bongcam-Rudloff

PLoS Comput. Biol., 2017

Identification of miRNA from Bouteloua gracilis, a drought tolerant grass, by deep sequencing and their in silico analysis.

Perla Lucía Ordóñez-Baquera, Everardo González-Rodríguez, Gerardo Armando Aguado-Santacruz, Quintín Rascón-Cruz, Ana Conesa, Verónica Moreno-Brito, Raquel Echavarria, Joel Dominguez-Viveros

Comput. Biol. Chem., 2017

2016

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences.

Pedro Furió-Tarí, Sonia Tarazona, Toni Gabaldón, Anton J. Enright, Ana Conesa

Nucleic Acids Res., 2016

Separating common from distinctive variation.

Frans M. van der Kloet, Patricia Sebastián-León, Ana Conesa, Age K. Smilde, Johan A. Westerhuis

BMC Bioinform., 2016

RGmatch: matching genomic regions to proximal genes in omics data integration.

Pedro Furió-Tarí, Ana Conesa, Sonia Tarazona

BMC Bioinform., 2016

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.

Konstantin Okonechnikov, Ana Conesa, Fernando García-Alcalde

Bioinform., 2016

2014

Understanding disease mechanisms with models of signaling pathway activities.

Patricia Sebastián-León, Enrique Vidal, Pablo Minguez, Ana Conesa, Sonia Tarazona, Alicia Amadoz, Carmen Armero, Francisco Salavert, Antonio Vidal-Puig, David Montaner, Joaquín Dopazo

BMC Syst. Biol., 2014

Pathway network inference from gene expression data.

Ignacio Ponzoni, María José Nueda, Sonia Tarazona, Stefan Götz, David Montaner, Julieta Sol Dussaut, Joaquín Dopazo, Ana Conesa

BMC Syst. Biol., 2014

STATegra EMS: an Experiment Management System for complex next-generation omics experiments.

Rafael Hernández-de-Diego, Noemi Boix-Chova, David Gomez-Cabrero, Jesper Tegnér, Imad Abugessaisa, Ana Conesa

BMC Syst. Biol., 2014

Data integration in the era of omics: current and future challenges.

David Gomez-Cabrero, Imad Abugessaisa, Dieter Maier, Andrew E. Teschendorff, Matthias Merkenschlager, Andreas Gisel, Esteban Ballestar, Erik Bongcam-Rudloff, Ana Conesa, Jesper Tegnér

BMC Syst. Biol., 2014

The common ground of genomics and systems biology.

Ana Conesa, Ali Mortazavi

BMC Syst. Biol., 2014

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series.

María José Nueda, Sonia Tarazona, Ana Conesa

Bioinform., 2014

2012

Qualimap: evaluating next-generation sequencing alignment data.

Fernando García-Alcalde, Konstantin Okonechnikov, José Carbonell, Luis M. Cruz, Stefan Götz, Sonia Tarazona, Joaquín Dopazo, Thomas F. Meyer, Ana Conesa

Bioinform., 2012

2011

B2G-FAR, a species-centered GO annotation repository.

Stefan Götz, Roland Arnold, Patricia Sebastián-León, Samuel Martín-Rodríguez, Patrick Tischler, Marc-André Jehl, Joaquín Dopazo, Thomas Rattei, Ana Conesa

Bioinform., 2011

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data.

Fernando García-Alcalde, Federico García-López, Joaquín Dopazo, Ana Conesa

Bioinform., 2011

2010

SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters.

Thomas Rattei, Patrick Tischler, Stefan Götz, Marc-André Jehl, Jonathan Hoser, Roland Arnold, Ana Conesa, Hans-Werner Mewes

Nucleic Acids Res., 2010

Serial Expression Analysis: a web tool for the analysis of serial gene expression data.

María José Nueda, José Carbonell, Ignacio Medina, Joaquín Dopazo, Ana Conesa

Nucleic Acids Res., 2010

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.

Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García-García, Martina Marbà, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2010

2009

Functional assessment of time course microarray data.

María José Nueda, Patricia Sebastián, Sonia Tarazona, Francisco García-García, Joaquín Dopazo, Alberto Ferrer, Ana Conesa

BMC Bioinform., 2009

2008

GEPAS, a web-based tool for microarray data analysis and interpretation.

Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2008

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.

Fátima Al-Shahrour, José Carbonell, Pablo Minguez, Stefan Götz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2008

2007

Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.

María José Nueda, Ana Conesa, Johan A. Westerhuis, Huub C. J. Hoefsloot, Age K. Smilde, Manuel Talón, Alberto Ferrer

Bioinform., 2007

2006

maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments.

Ana Conesa, María José Nueda, Alberto Ferrer, Manuel Talón

Bioinform., 2006

Blast2GO goes Grid: Developing a Grid-Enabled Prototype for Functional Genomics Analysis.

Gabriel Aparício, Stefan Götz, Ana Conesa, Damià Segrelles, Ignacio Blanquer, Juan Miguel García, Vicente Hernández, Montserrat Robles, Manuel Talón

Proceedings of the Challenges and Opportunities of HealthGrids, 2006

2005

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Ana Conesa, Stefan Götz, Juan Miguel García-Gómez, Javier Terol, Manuel Talón, Montserrat Robles

Bioinform., 2005

2004

Blast2GO: A Universal Annotation and Visualization Tool for Functional Genomics Research.

Ana Conesa, Stefan Götz, Juan Miguel García-Gómez, Montserrat Robles, Manuel Talón

Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004