Amos Bairoch

Orcid: 0000-0003-2826-6444

According to our database1, Amos Bairoch authored at least 81 papers between 1991 and 2024.

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Timeline

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Bibliography

2024
A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications.
CoRR, 2024

2021
Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students.
Database J. Biol. Databases Curation, 2021

2020
The neXtProt knowledgebase in 2020: data, tools and usability improvements.
Nucleic Acids Res., 2020

The ABCD database: a repository for chemically defined antibodies.
Nucleic Acids Res., 2020

The Feature-Viewer: a visualization tool for positional annotations on a sequence.
Bioinform., 2020

2017
The neXtProt knowledgebase on human proteins: 2017 update.
Nucleic Acids Res., 2017

Triage by ranking to support the curation of protein interactions.
Database J. Biol. Databases Curation, 2017

2016
ICEPO: the ion channel electrophysiology ontology.
Database J. Biol. Databases Curation, 2016

2015
Converting neXtProt into Linked Data and nanopublications.
Semantic Web, 2015

The neXtProt knowledgebase on human proteins: current status.
Nucleic Acids Res., 2015

Deep Question Answering for protein annotation.
Database J. Biol. Databases Curation, 2015

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
Database J. Biol. Databases Curation, 2015

2014
Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression.
J. Web Semant., 2014

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
Nucleic Acids Res., 2014

2012
UniPathway: a resource for the exploration and annotation of metabolic pathways.
Nucleic Acids Res., 2012

neXtProt: a knowledge platform for human proteins.
Nucleic Acids Res., 2012

2011
ViralZone: a knowledge resource to understand virus diversity.
Nucleic Acids Res., 2011

Towards BioDBcore: a community-defined information specification for biological databases.
Database J. Biol. Databases Curation, 2011

A Preliminary Study on the Prediction of Human Protein Functions.
Proceedings of the Foundations on Natural and Artificial Computation, 2011

2010
PROSITE, a protein domain database for functional characterization and annotation.
Nucleic Acids Res., 2010

OpenFluDB, a database for human and animal influenza virus.
Database J. Biol. Databases Curation, 2010

2009
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.
Nucleic Acids Res., 2009

InterPro: the integrative protein signature database.
Nucleic Acids Res., 2009

CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens.
Nucleic Acids Res., 2009

Infrastructure for the life sciences: design and implementation of the UniProt website.
BMC Bioinform., 2009

Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase.
Database J. Biol. Databases Curation, 2009

2008
The 20 years of PROSITE.
Nucleic Acids Res., 2008

Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008.
BMC Bioinform., 2008

UniProtKB/Swiss-Prot: New and Future Developments.
Proceedings of the Data Integration in the Life Sciences, 5th International Workshop, 2008

2007
New developments in the InterPro database.
Nucleic Acids Res., 2007

2006
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic Acids Res., 2006

The PROSITE database.
Nucleic Acids Res., 2006

ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins.
Nucleic Acids Res., 2006

2005
InterPro, progress and status in 2005.
Nucleic Acids Res., 2005

The Universal Protein Resource (UniProt).
Nucleic Acids Res., 2005

ProRule: a new database containing functional and structural information on PROSITE profiles.
Bioinform., 2005

2004
Recent improvements to the PROSITE database.
Nucleic Acids Res., 2004

IntAct: an open source molecular interaction database.
Nucleic Acids Res., 2004

IntEnz, the integrated relational enzyme database.
Nucleic Acids Res., 2004

UniProt: the Universal Protein knowledgebase.
Nucleic Acids Res., 2004

Swiss-Prot: Juggling between evolution and stability.
Briefings Bioinform., 2004

2003
NEWT, a new taxonomy portal.
Nucleic Acids Res., 2003

The InterPro Database, 2003 brings increased coverage and new features.
Nucleic Acids Res., 2003

ExPASy: the proteomics server for in-depth protein knowledge and analysis.
Nucleic Acids Res., 2003

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
Nucleic Acids Res., 2003

Automated annotation of microbial proteomes in SWISS-PROT.
Comput. Biol. Chem., 2003

2002
The PROSITE database, its status in 2002.
Nucleic Acids Res., 2002

The Sulfinator: predicting tyrosine sulfation sites in protein sequences.
Bioinform., 2002

PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors.
Briefings Bioinform., 2002

High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL.
Briefings Bioinform., 2002

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites
Briefings Bioinform., 2002

2001
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Res., 2001

Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al.
Bioinform., 2001

2000
The 1999 SWISS-2DPAGE database update.
Nucleic Acids Res., 2000

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.
Nucleic Acids Res., 2000

The ENZYME database in 2000.
Nucleic Acids Res., 2000

Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!.
Bioinform., 2000

InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinform., 2000

1999
The SWISS-2DPAGE database: what has changed during the last year.
Nucleic Acids Res., 1999

The PROSITE database, its status in 1999.
Nucleic Acids Res., 1999

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.
Nucleic Acids Res., 1999

The ENZYME data bank in 1999.
Nucleic Acids Res., 1999

Representation of functional information in the SWISS-PROT Data Bank.
Bioinform., 1999

1998
GPCRDB: an information system for G protein-coupled receptors.
Nucleic Acids Res., 1998

Current status of the SWISS-2DPAGE database.
Nucleic Acids Res., 1998

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.
Nucleic Acids Res., 1998

1997
The PROSITE database, its status in 1997.
Nucleic Acids Res., 1997

The SWISS-PROT protein sequence data bank and its supplement TrEMBL.
Nucleic Acids Res., 1997

Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

1996
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces.
Nucleic Acids Res., 1996

The PROSITE database, its status in 1995.
Nucleic Acids Res., 1996

The SWISS-PROT protein sequence data bank and its new supplement TREMBL.
Nucleic Acids Res., 1996

The ENZYME data bank in 1995.
Nucleic Acids Res., 1996

The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995.
Nucleic Acids Res., 1996

New Developments in the Linking of Biological Databases and Computer-Generation of Annotation.
Proceedings of the German Conference on Bioinformatics, 1996

New Developments in Linking of Biological Databases and Computer-Generation of Annotations: SWISS-PROT and Its Computer-Annotated Supplement TREMBL.
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996

1994
A Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation.
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994

1993
The SWISS-PROT protein sequence data bank, recent developments.
Nucleic Acids Res., 1993

The ENZYME data bank.
Nucleic Acids Res., 1993

The PROSITE dictionary of sites and patterns in proteins, its current status.
Nucleic Acids Res., 1993

1991
SEQANALREF: a sequence analysis bibliographic reference databank.
Comput. Appl. Biosci., 1991


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