Amit G. Deshwar

According to our database, Amit G. Deshwar authored at least 10 papers between 2011 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2020

The evolutionary history of 2,658 cancers.

Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo

Nat., 2020

2018

COSSMO: predicting competitive alternative splice site selection using deep learning.

Hannes Bretschneider, Shreshth Gandhi, Amit G. Deshwar, Khalid Zuberi, Brendan J. Frey

Bioinform., 2018

Reconstructing evolutionary trajectories of mutations in cancer.

Yulia Rubanova, Ruian Shi, Roujia Li, Jeff Wintersinger, Amit G. Deshwar, Nil Sahin, Quaid Morris

Proceedings of the 6th International Conference on Learning Representations, 2018

2015

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles.

Catalina V. Anghel, Gerald T. Quon, Syed Haider, Francis Nguyen, Amit G. Deshwar, Quaid Morris, Paul C. Boutros

BMC Bioinform., 2015

Comparing Nonparametric Bayesian Tree Priors for Clonal Reconstruction of Tumors.

Amit G. Deshwar, Shankar Vembu, Quaid Morris

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014

Reconstructing subclonal composition and evolution from whole genome sequencing of tumors.

Amit G. Deshwar, Shankar Vembu, Christina K. Yung, Gun Ho Jang, Lincoln Stein, Quaid Morris

CoRR, 2014

Inferring clonal evolution of tumors from single nucleotide somatic mutations.

Wei Jiao, Shankar Vembu, Amit G. Deshwar, Lincoln Stein, Quaid Morris

BMC Bioinform., 2014

PLIDA: cross-platform gene expression normalization using perturbed topic models.

Amit G. Deshwar, Quaid Morris

Bioinform., 2014

2012

Modeling the Clonal Evolution of Cancer from Next Generation Sequencing Data

Wei Jiao, Shankar Vembu, Amit G. Deshwar, Lincoln Stein, Quaid Morris

CoRR, 2012

2011

Computational purification of tumor gene expression data.

Amit G. Deshwar, Gerald T. Quon, Quaid Morris

BMC Bioinform., 2011