Aly Azeem Khan

According to our database, Aly Azeem Khan authored at least 13 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Computational prediction of protein interactions in single cells by proximity sequencing.

Junjie Xia, Hoang Van Phan, Luke Vistain, Mengjie Chen, Aly A. Khan, Savas Tay

PLoS Comput. Biol., 2024

TRIBAL: Tree Inference of B Cell Clonal Lineages.

Leah L. Weber, Derek Reiman, Mrinmoy Saha Roddur, Yuanyuan Qi, Mohammed El-Kebir, Aly A. Khan

Proceedings of the Research in Computational Molecular Biology, 2024

Enhancing Instance-Level Image Classification with Set-Level Labels.

Renyu Zhang, Aly A. Khan, Yuxin Chen, Robert L. Grossman

Proceedings of the Twelfth International Conference on Learning Representations, 2024

2023

Scalable Batch-Mode Deep Bayesian Active Learning via Equivalence Class Annealing.

Renyu Zhang, Aly A. Khan, Robert L. Grossman, Yuxin Chen

Proceedings of the Eleventh International Conference on Learning Representations, 2023

2022

Privacy preserving validation for multiomic prediction models.

Talal Ahmed, Mark A. Carty, Stephane Wenric, Jonathan R. Dry, Ameen A. Salahudeen, Aly A. Khan, Eric Lefkofsky, Martin C. Stumpe, Raphael Pelossof

Briefings Bioinform., 2022

2021

Pseudocell Tracer - A method for inferring dynamic trajectories using scRNAseq and its application to B cells undergoing immunoglobulin class switch recombination.

Derek Reiman, Godhev Kumar Manakkat Vijay, Heping Xu, Andrew Sonin, Dianyu Chen, Nathan Salomonis, Harinder Singh, Aly A. Khan

PLoS Comput. Biol., 2021

BALanCe: Deep Bayesian Active Learning via Equivalence Class Annealing.

Renyu Zhang, Aly A. Khan, Robert L. Grossman, Yuxin Chen

CoRR, 2021

2020

Evaluating and interpreting caption prediction for histopathology images.

Renyu Zhang, Christopher Weber, Robert L. Grossman, Aly A. Khan

Proceedings of the Machine Learning for Healthcare Conference, 2020

Evaluation of Hyperbolic Attention in Histopathology Images.

Renyu Zhang, Aly A. Khan, Robert L. Grossman

Proceedings of the 20th IEEE International Conference on Bioinformatics and Bioengineering, 2020

2019

Integrating RNA expression and visual features for immune infiltrate prediction.

Derek Reiman, Lingdao Sha, Irvin Ho, Timothy Tan, Denise Lau, Aly A. Khan

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2018

Predicting protein-protein interactions through sequence-based deep learning.

Somaye Hashemifar, Behnam Neyshabur, Aly A. Khan, Jinbo Xu

Bioinform., 2018

2017

BASIC: BCR assembly from single cells.

Stefan Canzar, Karlynn E. Neu, Qingming Tang, Patrick C. Wilson, Aly A. Khan

Bioinform., 2017

2004

Geometric Analysis of Cross-Linkability for Protein Fold Discrimination.

Shobha Potluri, Aly Azeem Khan, A. Kuzminykh, Janusz M. Bujnicki, Alan M. Friedman, Chris Bailey-Kellogg

Proceedings of the Biocomputing 2004, 2004