Altuna Akalin

According to our database, Altuna Akalin authored at least 10 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

scMaui: a widely applicable deep learning framework for single-cell multiomics integration in the presence of batch effects and missing data.

Yunhee Jeong, Jonathan Ronen, Wolfgang Kopp, Pavlo Lutsik, Altuna Akalin

BMC Bioinform., December, 2024

Compass: A Comprehensive Tool for Accurate and Efficient Molecular Docking in Inference and Fine-Tuning.

Ahmet Sarigün, Vedran Franke, Altuna Akalin

CoRR, 2024

2022

Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning.

Wolfgang Kopp, Altuna Akalin, Uwe Ohler

Nat. Mach. Intell., 2022

2018

<i>netSmooth</i>: Network-smoothing based imputation for single cell RNA-seq.

Jonathan Ronen, Altuna Akalin

F1000Research, 2018

2017

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.

Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen

Nucleic Acids Res., 2017

2015

DoRiNA 2.0 - upgrading the doRiNA database of RNA interactions in post-transcriptional regulation.

Kai Blin, Christoph Dieterich, Ricardo Wurmus, Nikolaus Rajewsky, Markus Landthaler, Altuna Akalin

Nucleic Acids Res., 2015

genomation: a toolkit to summarize, annotate and visualize genomic intervals.

Altuna Akalin, Vedran Franke, Kristian Vlahovicek, Christopher E. Mason, Dirk Schübeler

Bioinform., 2015

2014

Two independent transcription initiation codes overlap on vertebrate core promoters.

Vanja Haberle, Nan Li, Yavor Hadzhiev, Charles Plessy, Christopher Previti, Chirag Nepal, Jochen Gehrig, Xianjun Dong, Altuna Akalin, Ana Maria Suzuki, Wilfred F. J. van IJcken, Olivier Armant, Marco Ferg, Uwe Strähle, Piero Carninci, Ferenc Müller, Boris Lenhard

Nat., 2014

2013

An optimized algorithm for detecting and annotating regional differential methylation.

Sheng Li, Francine E. Garrett-Bakelman, Altuna Akalin, Paul Zumbo, Ross Levine, Bik L. To, Ian D. Lewis, Anna L. Brown, Richard J. D'Andrea, Ari Melnick, Christopher E. Mason

BMC Bioinform., 2013

2010

Translog, a web browser for studying the expression divergence of homologous genes.

Xianjun Dong, Altuna Akalin, Yogita Sharma, Boris Lenhard

BMC Bioinform., 2010