Allen R. Tannenbaum

Orcid: 0000-0002-0567-5256

Affiliations:
  • Stony Brook University, Department of Applied Mathematics & Statistics, NY, USA
  • Memorial Sloan Kettering Cancer Center, New York City, USA
  • Georgia Institute of Technology, Atlanta, USA


According to our database1, Allen R. Tannenbaum authored at least 287 papers between 1986 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Awards

IEEE Fellow

IEEE Fellow 2009, "For contributions to robust control and computer vision".

Timeline

Legend:

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In proceedings 
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Links

Online presence:

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Bibliography

2024
Wasserstein HOG: Local Directionality Extraction via Optimal Transport.
IEEE Trans. Medical Imaging, March, 2024

Multi-omic integrated curvature study on pan-cancer genomic data.
Math. Control. Signals Syst., March, 2024

From Geometry to Causality- Ricci Curvature and the Reliability of Causal Inference on Networks.
Proceedings of the Forty-first International Conference on Machine Learning, 2024

Distributed Nonlinear Filtering using Triangular Transport Maps.
Proceedings of the American Control Conference, 2024

2023
Visualizing Fluid Flows via Regularized Optimal Mass Transport with Applications to Neuroscience.
J. Sci. Comput., October, 2023

Geometric graph neural networks on multi-omics data to predict cancer survival outcomes.
Comput. Biol. Medicine, September, 2023

Volume Exploration Using Multidimensional Bhattacharyya Flow.
IEEE Trans. Vis. Comput. Graph., March, 2023

Computational Optimal Transport and Filtering on Riemannian Manifolds.
IEEE Control. Syst. Lett., 2023

Optimal Transport for Kernel Gaussian Mixture Models.
CoRR, 2023

Data Assimilation for Sign-indefinite Priors: A generalization of Sinkhorn's algorithm.
CoRR, 2023

Negative probabilities in Gene Regulatory Networks.
CoRR, 2023

Unbalanced Regularized Optimal Mass Transport with Applications to Fluid Flows in the Brain.
CoRR, 2023

2022
aWCluster: A Novel Integrative Network-Based Clustering of Multiomics for Subtype Analysis of Cancer Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Wasserstein-based texture analysis in radiomic studies.
Comput. Medical Imaging Graph., 2022

The maximum entropy principle for compositional data.
BMC Bioinform., 2022

2021
Stochastic Norton-Simon-Massagué Tumor Growth Modeling: Controlled and Mixed-Effect Uncontrolled Analysis.
IEEE Trans. Control. Syst. Technol., 2021

Reproducible and Interpretable Spiculation Quantification for Lung Cancer Screening.
Comput. Methods Programs Biomed., 2021

PathCNN: interpretable convolutional neural networks for survival prediction and pathway analysis applied to glioblastoma.
Bioinform., 2021

2020
Relaxed Schrödinger Bridges and Robust Network Routing.
IEEE Trans. Control. Netw. Syst., 2020

Stochastic Control and Nonequilibrium Thermodynamics: Fundamental Limits.
IEEE Trans. Autom. Control., 2020

Optimal transport for vector Gaussian mixture models.
CoRR, 2020

A novel kernel Wasserstein distance on Gaussian measures: An application of identifying dental artifacts in head and neck computed tomography.
Comput. Biol. Medicine, 2020

A Vectorial Approach to Unbalanced Optimal Mass Transport.
IEEE Access, 2020

Multimarginal Wasserstein Barycenter for Stain Normalization and Augmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Fisher-Rao Regularized Transport Analysis of the Glymphatic System and Waste Drainage.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

2019
Kernel Wasserstein Distance.
CoRR, 2019

Probabilistic Kernel Support Vector Machines.
CoRR, 2019

Optimal Transport for Gaussian Mixture Models.
IEEE Access, 2019

Controlled and Uncontrolled Stochastic Norton-Simon-Massagué Tumor Growth Models.
Proceedings of the 58th IEEE Conference on Decision and Control, 2019

2018
Guiding Image Segmentation on the Fly: Interactive Segmentation From a Feedback Control Perspective.
IEEE Trans. Autom. Control., 2018

Regularization and Interpolation of Positive Matrices.
IEEE Trans. Autom. Control., 2018

Matrix Optimal Mass Transport: A Quantum Mechanical Approach.
IEEE Trans. Autom. Control., 2018

Efficient Robust Routing for Single Commodity Network Flows.
IEEE Trans. Autom. Control., 2018

Vector-Valued Optimal Mass Transport.
SIAM J. Appl. Math., 2018

An Efficient Algorithm for Matrix-Valued and Vector-Valued Optimal Mass Transport.
J. Sci. Comput., 2018

Affine Differential Invariants for Invariant Feature Point Detection.
CoRR, 2018

Stochastic control and non-equilibrium thermodynamics: fundamental limits.
CoRR, 2018

Extraction of breast lesions from ultrasound imagery: Bhattacharyya gradient flow approach.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

GlymphVIS: Visualizing Glymphatic Transport Pathways Using Regularized Optimal Transport.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Interpretable Spiculation Quantification for Lung Cancer Screening.
Proceedings of the Shape in Medical Imaging, 2018

2017
Robust Transport Over Networks.
IEEE Trans. Autom. Control., 2017

Cerebrospinal and interstitial fluid transport via the glymphatic pathway modeled by optimal mass transport.
NeuroImage, 2017

Matricial Wasserstein-1 Distance.
IEEE Control. Syst. Lett., 2017

Sulci segmentation using geometric active contours.
Proceedings of the Medical Imaging 2017: Image Processing, 2017

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis.
Proceedings of the Medical Imaging 2017: Digital Pathology, 2017

2016
A Stochastic Approach to Diffeomorphic Point Set Registration with Landmark Constraints.
IEEE Trans. Pattern Anal. Mach. Intell., 2016

Interactive Image Segmentation From A Feedback Control Perspective.
CoRR, 2016

Transport Distance on Graphs and Vector-Valued Optimal Mass Transport.
CoRR, 2016

Hierarchical nucleus segmentation in digital pathology images.
Proceedings of the Medical Imaging 2016: Digital Pathology, San Diego, California, United States, 27 February, 2016

Multi-scale learning based segmentation of glands in digital colonrectal pathology images.
Proceedings of the Medical Imaging 2016: Digital Pathology, San Diego, California, United States, 27 February, 2016

Geometry of correlation networks for studying the biology of cancer.
Proceedings of the 55th IEEE Conference on Decision and Control, 2016

A new approach to robust transportation over networks.
Proceedings of the 55th IEEE Conference on Decision and Control, 2016

Transcriptional responses to ultraviolet and ionizing radiation: An approach based on graph curvature.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
On Matrix-Valued Monge-Kantorovich Optimal Mass Transport.
IEEE Trans. Autom. Control., 2015

Linear Models Based on Noisy Data and the Frisch Scheme.
SIAM Rev., 2015

A Kalman Filtering Perspective for Multiatlas Segmentation.
SIAM J. Imaging Sci., 2015

Interactive image segmentation framework based on control theory.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Optimal-mass-transfer-based estimation of glymphatic transport in living brain.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

2014
Numerical Methods in Curve Evolution Theory.
Computer Vision, A Reference Guide, 2014

A Complete System for Automatic Extraction of Left Ventricular Myocardium From CT Images Using Shape Segmentation and Contour Evolution.
IEEE Trans. Image Process., 2014

MRI brain tumor segmentation and necrosis detection using adaptive Sobolev snakes.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Interpolation of longitudinal shape and image data via optimal mass transport.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

A framework for joint image-and-shape analysis.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Reconstruction and feature selection for desorption electrospray ionization mass spectroscopy imagery.
Proceedings of the Medical Imaging 2014: Image-Guided Procedures, 2014

Macroscopic analysis of crowd motion in video sequences.
Proceedings of the 53rd IEEE Conference on Decision and Control, 2014

2013
Interactive Medical Image Segmentation Using PDE Control of Active Contours.
IEEE Trans. Medical Imaging, 2013

Automatic Segmentation of the Left Atrium From MR Images via Variational Region Growing With a Moments-Based Shape Prior.
IEEE Trans. Image Process., 2013

Optical Flow Estimation for Flame Detection in Videos.
IEEE Trans. Image Process., 2013

Sparse Texture Active Contour.
IEEE Trans. Image Process., 2013

Automatic Delineation of the Myocardial Wall From CT Images Via Shape Segmentation and Variational Region Growing.
IEEE Trans. Biomed. Eng., 2013

Multimodal Deformable Registration of Traumatic Brain Injury MR Volumes via the Bhattacharyya Distance.
IEEE Trans. Biomed. Eng., 2013

A new distance measure based on generalized Image Normalized Cross-Correlation for robust video tracking and image recognition.
Pattern Recognit. Lett., 2013

Joint CT/CBCT deformable registration and CBCT enhancement for cancer radiotherapy.
Medical Image Anal., 2013

Particle filters and occlusion handling for rigid 2D-3D pose tracking.
Comput. Vis. Image Underst., 2013

IMU-compensated image segmentation for improved vision-based control performance.
Proceedings of the IEEE International Systems Conference, 2013

Stochastic image registration with user constraints.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

A stochastic approach for non-rigid image registration.
Proceedings of the Image Processing: Algorithms and Systems XI, 2013

Anomaly detection in videos: A dynamical systems approach.
Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

2012
Self-Crossing Detection and Location for Parametric Active Contours.
IEEE Trans. Image Process., 2012

Filtering in the Diffeomorphism Group and the Registration of Point Sets.
IEEE Trans. Image Process., 2012

Clinical Decision Support and Closed-Loop Control for Cardiopulmonary Management and Intensive Care Unit Sedation Using Expert Systems.
IEEE Trans. Control. Syst. Technol., 2012

A 3D interactive multi-object segmentation tool using local robust statistics driven active contours.
Medical Image Anal., 2012

Multiscale 3D shape representation and segmentation with applications to hippocampal/caudate extraction from brain MRI.
Medical Image Anal., 2012

Volumetric Mapping of Genus Zero Objects via Mass Preservation
CoRR, 2012

Automatic segmentation of the left atrium from MRI images using salient feature and contour evolution.
Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012

Recursive feature elimination for brain tumor classification using desorption electrospray ionization mass spectrometry imaging.
Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012

2011
Object Tracking and Target Reacquisition Based on 3-D Range Data for Moving Vehicles.
IEEE Trans. Image Process., 2011

Nonparametric Clustering for Studying RNA Conformations.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Particle Filtering with Region-based Matching for Tracking of Partially Occluded and Scaled Targets.
SIAM J. Imaging Sci., 2011

A Nonrigid Kernel-Based Framework for 2D-3D Pose Estimation and 2D Image Segmentation.
IEEE Trans. Pattern Anal. Mach. Intell., 2011

Human Body Tracking and Joint Angle Estimation from Mobile-phone Video for Clinical Analysis.
Proceedings of the IAPR Conference on Machine Vision Applications (IAPR MVA 2011), 2011

Estimation of myocardial volume at risk from CT angiography.
Proceedings of the Medical Imaging 2011: Computer-Aided Diagnosis, 2011

Combining atlas and active contour for automatic 3D medical image segmentation.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Temporal registration of partial data using particle filtering.
Proceedings of the 18th IEEE International Conference on Image Processing, 2011

A video analytics framework for amorphous and unstructured anomaly detection.
Proceedings of the 18th IEEE International Conference on Image Processing, 2011

Monte Carlo sampling for visual pose tracking.
Proceedings of the 18th IEEE International Conference on Image Processing, 2011

Classification of astrocytomas and oligodendrogliomas from mass spectrometry data using sparse kernel machines.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

A compressive sensing approach for glioma margin delineation using mass spectrometry.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

Depth invariant visual servoing.
Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011

Interactive MRI segmentation with controlled active vision.
Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011

A robust aim point tracking algorithm for 3-D laser radar imagery.
Proceedings of the American Control Conference, 2011

2010
Texture Mapping via Optimal Mass Transport.
IEEE Trans. Vis. Comput. Graph., 2010

Tubular Surface Segmentation for Extracting Anatomical Structures From Medical Imagery.
IEEE Trans. Medical Imaging, 2010

A Coupled Global Registration and Segmentation Framework With Application to Magnetic Resonance Prostate Imagery.
IEEE Trans. Medical Imaging, 2010

Deform PF-MT: Particle Filter With Mode Tracker for Tracking Nonaffine Contour Deformations.
IEEE Trans. Image Process., 2010

Relevance Vector Machine Learning for Neonate Pain Intensity Assessment Using Digital Imaging.
IEEE Trans. Biomed. Eng., 2010

An Efficient Numerical Method for the Solution of the L<sub>2</sub> Optimal Mass Transfer Problem.
SIAM J. Sci. Comput., 2010

A Geometric Approach to Joint 2D Region-Based Segmentation and 3D Pose Estimation Using a 3D Shape Prior.
SIAM J. Imaging Sci., 2010

Point Set Registration via Particle Filtering and Stochastic Dynamics.
IEEE Trans. Pattern Anal. Mach. Intell., 2010

'Active contour without edges', on parametric manifolds.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Shape based MRI prostate image segmentation using local information driven directional distance Bayesian method.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Image processing and registration in a point set representation.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Fast Hamilton-Jacobi equation solver and neural fiber bundle extraction.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Segmentation of the endocardial wall of the left atrium using local region-based active contours and statistical shape learning.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

User-driven 3D mesh region targeting.
Proceedings of the Medical Imaging 2010: Visualization, 2010

Simultaneous Multi-object Segmentation Using Local Robust Statistics and Contour Interaction.
Proceedings of the Medical Computer Vision. Recognition Techniques and Applications in Medical Imaging, 2010

Population analysis of the cingulum bundle using the tubular surface model for schizophrenia detection.
Proceedings of the Medical Imaging 2010: Computer-Aided Diagnosis, San Diego, 2010

An unsupervised learning approach for facial expression recognition using semi-definite programming and generalized principal component analysis.
Proceedings of the Image Processing: Algorithms and Systems VIII, 2010

Range based object tracking and segmentation.
Proceedings of the International Conference on Image Processing, 2010

Fire and smoke detection in video with optimal mass transport based optical flow and neural networks.
Proceedings of the International Conference on Image Processing, 2010

Signals and control aspects of optimal mass transport and the Boltzmann entropy.
Proceedings of the 49th IEEE Conference on Decision and Control, 2010

Separation of system dynamics and line spectra via sparse representation.
Proceedings of the 49th IEEE Conference on Decision and Control, 2010

Delay estimation for wireless LAN control of nonlinear systems.
Proceedings of the 49th IEEE Conference on Decision and Control, 2010

Optimal drug dosing control for intensive care unit sedation using a hybrid deterministic-stochastic pharmacokinetic and pharmacodynamic model.
Proceedings of the 49th IEEE Conference on Decision and Control, 2010

Closed-loop control for cardiopulmonary management and intensive care unit sedation using expert systems.
Proceedings of the 49th IEEE Conference on Decision and Control, 2010

Visual closed-loop tracking with area stabilization.
Proceedings of the American Control Conference, 2010

2009
Vision-Based Range Regulation of a Leader-Follower Formation.
IEEE Trans. Control. Syst. Technol., 2009

Near-tubular fiber bundle segmentation for diffusion weighted imaging: Segmentation through frame reorientation.
NeuroImage, 2009

3D nonrigid registration via optimal mass transport on the GPU.
Medical Image Anal., 2009

Segmentation of Facial Expressions Using Semi-Definite Programming and Generalized Principal Component Analysis
CoRR, 2009

Non-rigid 2D-3D pose estimation and 2D image segmentation.
Proceedings of the 2009 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2009), 2009

Statistical shape learning for 3D tracking.
Proceedings of the 48th IEEE Conference on Decision and Control, 2009

2008
Guest Editorial Introduction to the Special Section on Computer Vision for Intravascular and Intracardiac Imaging.
IEEE Trans. Inf. Technol. Biomed., 2008

Segmentation of Tracking Sequences Using Dynamically Updated Adaptive Learning.
IEEE Trans. Image Process., 2008

Dynamic Denoising of Tracking Sequences.
IEEE Trans. Image Process., 2008

Localizing Region-Based Active Contours.
IEEE Trans. Image Process., 2008

Knowledge-Based Segmentation for Tracking Through Deep Turbulence.
IEEE Trans. Control. Syst. Technol., 2008

On approximation of smooth functions from samples of partial derivatives with application to phase unwrapping.
Signal Process., 2008

Geometric Observers for Dynamically Evolving Curves.
IEEE Trans. Pattern Anal. Mach. Intell., 2008

Finsler Active Contours.
IEEE Trans. Pattern Anal. Mach. Intell., 2008

A Framework for Image Segmentation Using Shape Models and Kernel Space Shape Priors.
IEEE Trans. Pattern Anal. Mach. Intell., 2008

Real-Time Visual Tracking Using Geometric Active Contours and Particle Filters.
J. Aerosp. Comput. Inf. Commun., 2008

Fast approximate curve evolution.
Proceedings of the Real-Time Image Processing 2008, San Jose, CA, USA, January 28-29, 2008, 2008

Improved tracking by decoupling camera and target motion.
Proceedings of the Real-Time Image Processing 2008, San Jose, CA, USA, January 28-29, 2008, 2008

A new distribution metric for image segmentation.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

Segmenting images analytically in shape space.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

Fast approximate surface evolution in arbitrary dimension.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

Label Space: A Coupled Multi-shape Representation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Label Space: A Multi-object Shape Representation.
Proceedings of the Combinatorial Image Analysis, 12th International Workshop, 2008

Tracking through changes in scale.
Proceedings of the International Conference on Image Processing, 2008

Kernel-based high-dimensional histogram estimation for visual tracking.
Proceedings of the International Conference on Image Processing, 2008

TAC: Thresholding active contours.
Proceedings of the International Conference on Image Processing, 2008

Robust 3D Pose Estimation and Efficient 2D Region-Based Segmentation from a 3D Shape Prior.
Proceedings of the Computer Vision, 2008

Particle filtering for registration of 2D and 3D point sets with stochastic dynamics.
Proceedings of the 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), 2008

Localized statistics for DW-MRI fiber bundle segmentation.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2008

Particle filtering using multiple cross-correlations for tracking occluded objects in cluttered scenes.
Proceedings of the 47th IEEE Conference on Decision and Control, 2008

On the Computation of Optimal Transport Maps Using Gradient Flows and Multiresolution Analysis.
Proceedings of the Recent Advances in Learning and Control, 2008

2007
Multiscale 3-D Shape Representation and Segmentation Using Spherical Wavelets.
IEEE Trans. Medical Imaging, 2007

An Image Morphing Technique Based on Optimal Mass Preserving Mapping.
IEEE Trans. Image Process., 2007

A Generic Framework for Tracking Using Particle Filter With Dynamic Shape Prior.
IEEE Trans. Image Process., 2007

Blind Deconvolution of Medical Ultrasound Images: A Parametric Inverse Filtering Approach.
IEEE Trans. Image Process., 2007

Image Segmentation Using Active Contours Driven by the Bhattacharyya Gradient Flow.
IEEE Trans. Image Process., 2007

Tracking Deforming Objects Using Particle Filtering for Geometric Active Contours.
IEEE Trans. Pattern Anal. Mach. Intell., 2007

A variational segmentation framework using active contours and thresholding.
Proceedings of the Signal and Image Processing (SIP 2007), 2007

Tissue tracking: applications for brain MRI classification.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Semi-automatic parcellation of the corpus striatum.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Finsler Tractography for White Matter Connectivity Analysis of the Cingulum Bundle.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Automatic Segmentation of Coronary Arteries Using Bayesian Driven Implicit Surfaces.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Statistical Shape Analysis of Brain Structures Using Spherical Wavelets.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Segmentation of Medical Ultrasound Images using Active Contours.
Proceedings of the International Conference on Image Processing, 2007

Graph Cut Segmentation with Nonlinear Shape Priors.
Proceedings of the International Conference on Image Processing, 2007

Locally-Constrained Region-Based Methods for DW-MRI Segmentation.
Proceedings of the IEEE 11th International Conference on Computer Vision, 2007

Multi-Object Tracking Through Clutter Using Graph Cuts.
Proceedings of the IEEE 11th International Conference on Computer Vision, 2007

Segmenting Images on the Tensor Manifold.
Proceedings of the 2007 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007), 2007

A Graph Cut Approach to Image Segmentation in Tensor Space.
Proceedings of the 2007 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007), 2007

Multigrid optimal mass transport for image registration and morphing.
Proceedings of the Computational Imaging V, San Jose, 2007

Fast Optimal Mass Transport for Dynamic Active Contour Tracking on the GPU.
Proceedings of the 46th IEEE Conference on Decision and Control, 2007

Fast Multigrid Optimal Mass Transport for Image Registration and Morphing.
Proceedings of the British Machine Vision Conference 2007, 2007

Layered Active Contours for Tracking.
Proceedings of the British Machine Vision Conference 2007, 2007

Finsler Level Set Segmentation for Imagery in Oriented Domains.
Proceedings of the British Machine Vision Conference 2007, 2007

Tracking Through Clutter Using Graph Cuts.
Proceedings of the British Machine Vision Conference 2007, 2007

A Variational Framework Combining Level-sets and Thresholding.
Proceedings of the British Machine Vision Conference 2007, 2007

Real-time Visual Tracking Using Geometric Active Contours for the Navigation and Control of UAVs.
Proceedings of the American Control Conference, 2007

2006
On the detection of simple points in higher dimensions using cubical homology.
IEEE Trans. Image Process., 2006

Statistical Analysis of RNA Backbone.
IEEE ACM Trans. Comput. Biol. Bioinform., 2006

Dynamic active contours for visual tracking.
IEEE Trans. Autom. Control., 2006

Coronary vessel trees from 3D imagery: A topological approach.
Medical Image Anal., 2006

A dorsolateral prefrontal cortex semi-automatic segmenter.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Shape-Driven 3D Segmentation Using Spherical Wavelets.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Deconvolution of medical ultrasound images via parametric inverse filtering.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Particle Filtering with Dynamic Shape Priors.
Proceedings of the Image Analysis and Recognition, Third International Conference, 2006

A Shape-Based Approach to Robust Image Segmentation.
Proceedings of the Image Analysis and Recognition, Third International Conference, 2006

Particle Filters for Infinite (or Large) Dimensional State Spaces- Part 1.
Proceedings of the 2006 IEEE International Conference on Acoustics Speech and Signal Processing, 2006

3D Modeling of Patient-Specific Geometries of Portal Veins Using MR Images.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

Comparative Analysis of Kernel Methods for Statistical Shape Learning.
Proceedings of the Computer Vision Approaches to Medical Image Analysis, 2006

Shape-Based Approach to Robust Image Segmentation using Kernel PCA.
Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2006), 2006

Time-varying Finite Dimensional Basis for Tracking Contour Deformations.
Proceedings of the 45th IEEE Conference on Decision and Control, 2006

Tracking deformable objects with unscented Kalman filtering and geometric active contours.
Proceedings of the American Control Conference, 2006

Medial Axis Computation and Evolution.
Proceedings of the Statistics and Analysis of Shapes, 2006

Curve Shortening and Interacting Particle Systems.
Proceedings of the Statistics and Analysis of Shapes, 2006

On a Stochastic Model of Geometric Snakes.
Proceedings of the Handbook of Mathematical Models in Computer Vision, 2006

2005
Flattening maps for the visualization of multibranched vessels.
IEEE Trans. Medical Imaging, 2005

Flux driven automatic centerline extraction.
Medical Image Anal., 2005

On the Evolution of Vector Distance Functions of Closed Curves.
Int. J. Comput. Vis., 2005

Coronary vessel cores from 3D imagery: a topological approach.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

Mass Preserving Registration for Heart MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Harmonic Skeleton Guided Evaluation of Stenoses in Human Coronary Arteries.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

A Hamilton-Jacobi-Bellman Approach to High Angular Resolution Diffusion Tractography.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Multiscale 3D Shape Analysis Using Spherical Wavelets.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Curve segmentation using directional information, relation to pattern detection.
Proceedings of the 2005 International Conference on Image Processing, 2005

Multigrid computation of rotationally invariant non-linear optical flow.
Proceedings of the 2005 International Conference on Image Processing, 2005

Particle Filtering for Geometric Active Contours with Application to Tracking Moving and Deforming Objects.
Proceedings of the 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2005), 2005

Flying in formation using a pursuit guidance algorithm.
Proceedings of the American Control Conference, 2005

2004
A statistically based flow for image segmentation.
Medical Image Anal., 2004

Development and Test of Highly Autonomous Unmanned Aerial Vehicles.
J. Aerosp. Comput. Inf. Commun., 2004

Area-Based Medial Axis of Planar Curves.
Int. J. Comput. Vis., 2004

Optimal Mass Transport for Registration and Warping.
Int. J. Comput. Vis., 2004

Image Interpolation Based on Optimal Mass Preserving Mappings.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Image morphing based on mutual information and optimal mass transport.
Proceedings of the 2004 International Conference on Image Processing, 2004

Dynamic Geodesic Snakes for Visual Tracking.
Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2004), with CD-ROM, 27 June, 2004

Automatic tracking of flying vehicles using geodesic snakes and Kalman filtering.
Proceedings of the 43rd IEEE Conference on Decision and Control, 2004

Active contours and optical flow for automatic tracking of flying vehicles.
Proceedings of the 2004 American Control Conference, 2004

2003
Minimizing Flows for the Monge-Kantorovich Problem.
SIAM J. Math. Anal., 2003

Length-Based Attacks for Certain Group Based Encryption Rewriting Systems.
IACR Cryptol. ePrint Arch., 2003

Length-Based Attacks for Certain Group Based Encryption Rewriting Systems
CoRR, 2003

Area-Preserving Mappings for the Visualization of Medical Structures.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

A Statistically Based Surface Evolution Method for Medical Image Segmentation: Presentation and Validation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Algorithms for stochastic approximations of curvature flows.
Proceedings of the 2003 International Conference on Image Processing, 2003

A stokes flow boundary integral measurement of tubular structure cross sections in two dimensions.
Proceedings of the 2003 International Conference on Image Processing, 2003

Flux Driven Fly Throughs.
Proceedings of the 2003 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2003), 2003

Dynamic level sets for visual tracking.
Proceedings of the 42nd IEEE Conference on Decision and Control, 2003

Crystalline Stochastic Systems and Curvature Driven Flows.
Proceedings of the Mathematical Systems Theory in Biology, 2003

2002
Hamilton-Jacobi Skeletons.
Int. J. Comput. Vis., 2002

Conformal flattening maps for the visualization of vessels.
Proceedings of the Medical Imaging 2002: Visualization, 2002

4D Active Surfaces for Cardiac Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

Angle-preserving mappings for the visualization of multi-branched vessels.
Proceedings of the 2002 International Conference on Image Processing, 2002

Analysis of blood vessel topology by cubical homology.
Proceedings of the 2002 International Conference on Image Processing, 2002

2001
On the computation of switching surfaces in optimal control: a Grobner basis approach.
IEEE Trans. Autom. Control., 2001

On the computation of the affine skeletons of planar curves and the detection of skew symmetry.
Pattern Recognit., 2001

Total-variational-based optical flow for cardiac-wall motion tracking.
Proceedings of the Medical Imaging 2001: Image Processing, 2001

Mass Preserving Mappings and Image Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Missile tracking using knowledge-based adaptive thresholding.
Proceedings of the 2001 International Conference on Image Processing, 2001

Cubical homology and the topological classification of 2D and 3D imagery.
Proceedings of the 2001 International Conference on Image Processing, 2001

Affine Invariant Erosion of 3D Shapes.
Proceedings of the Eighth International Conference On Computer Vision (ICCV-01), Vancouver, British Columbia, Canada, July 7-14, 2001, 2001

Mass-preserving maps for registration and visual tracking.
Proceedings of the 40th IEEE Conference on Decision and Control, 2001

2000
Conformal Surface Parameterization for Texture Mapping.
IEEE Trans. Vis. Comput. Graph., 2000

Nondistorting Flattening Maps and the 3D Visualization of Colon CT Images.
IEEE Trans. Medical Imaging, 2000

Knowledge-based segmentation of SAR data with learned priors.
IEEE Trans. Image Process., 2000

Non-distorting Flattening for Virtual Colonoscopy.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2000

Noise-Resistant Affine Skeletons of Planar Curves.
Proceedings of the Computer Vision - ECCV 2000, 6th European Conference on Computer Vision, Dublin, Ireland, June 26, 2000

Robust control and tracking.
Proceedings of the 39th IEEE Conference on Decision and Control, 2000

High resolution sensing and anisotropic segmentation for SAR imagery.
Proceedings of the 39th IEEE Conference on Decision and Control, 2000

1999
On the Laplace-Beltrami Operator and Brain Surface Flattening.
IEEE Trans. Medical Imaging, 1999

Curve evolution models for real-time identification with application to plasma etching.
IEEE Trans. Autom. Control., 1999

Shapes, shocks and wiggles.
Image Vis. Comput., 1999

Conformal Geometry and Brain Flattening.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1999

The Hamilton-Jacobi Skeleton.
Proceedings of the International Conference on Computer Vision, 1999

On the Evolution of the Skeleton.
Proceedings of the International Conference on Computer Vision, 1999

A Hamiltonian Approach to the Eikonal Equation.
Proceedings of the Energy Minimization Methods in Computer Vision and Pattern Recognition, 1999

1998
Area and length minimizing flows for shape segmentation.
IEEE Trans. Image Process., 1998

Differential and Numerically Invariant Signature Curves Applied to Object Recognition.
Int. J. Comput. Vis., 1998

Knowledge-based Segmentation of SAR Images.
Proceedings of the 1998 IEEE International Conference on Image Processing, 1998

Hyperbolic "Smoothing" of Shapes.
Proceedings of the Sixth International Conference on Computer Vision (ICCV-98), 1998

1997
A Geometric Snake Model for Segmentation of Medical Imagery.
IEEE Trans. Medical Imaging, 1997

Invariant Geometric Evolutions of Surfaces and Volumetric Smoothing.
SIAM J. Appl. Math., 1997

Area Minimizing Flows.
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997

Visual tracking, active vision, and gradient flows.
Proceedings of the confluence of vision and control, 1997

1996
Behavioral analysis of anisotropic diffusion in image processing .
IEEE Trans. Image Process., 1996

Optical flow: a curve evolution approach.
IEEE Trans. Image Process., 1996

Affine Invariant Detection: Edges, Active Contours, and Segments.
Proceedings of the 1996 Conference on Computer Vision and Pattern Recognition (CVPR '96), 1996

1995
Stability margin optimization via interpolation and conformal mappings.
IEEE Trans. Autom. Control., 1995

Area and Length Preserving Geometric Invariant Scale-Spaces.
IEEE Trans. Pattern Anal. Mach. Intell., 1995

Shapes, shocks, and deformations I: The components of two-dimensional shape and the reaction-diffusion space.
Int. J. Comput. Vis., 1995

On ill-posed anisotropic diffusion models.
Proceedings of the Proceedings 1995 International Conference on Image Processing, 1995

Gradient Flows and Geometric Active Contour Models.
Proceedings of the Procedings of the Fifth International Conference on Computer Vision (ICCV 95), 1995

1994
Differential Invariant Signatures and Flows in Computer Vision: A Symmetry Group Approach.
Proceedings of the Geometry-Driven Diffusion in Computer Vision, 1994

On Optimal Control Methods in Computer Vision and Image Processing.
Proceedings of the Geometry-Driven Diffusion in Computer Vision, 1994

Analysis and Design of Anisotropic Diffusion for Image Processing.
Proceedings of the Proceedings 1994 International Conference on Image Processing, 1994

Experiments on Geometric Image Enhancement.
Proceedings of the Proceedings 1994 International Conference on Image Processing, 1994

Area and Lenght Preserving Geometric Invariant Scale-Spaces.
Proceedings of the Computer Vision, 1994

1993
H<sup>∞</sup>-Optimal Control and Related Minimax Design Problems (Tamer Basar and Pierre Bernhard).
SIAM Rev., 1993

Affine invariant scale-space.
Int. J. Comput. Vis., 1993

From Curve Detection to Shape Description: an outline.
Proceedings of the Computer Vision: Systems, Theory and Applications, 1993

1991
On the structure of suboptimal H<sup>∞</sup> controllers in the sensitivity minimization problem for distributed stable plants.
Autom., 1991

Frequency domain analysis and robust control design for an ideal flexible beam.
Autom., 1991

1987
Robotic manipulators and the geometry of real semialgebraic sets.
IEEE J. Robotics Autom., 1987

1986
On the multivariable gain margin problem.
Autom., 1986


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