Alla L. Lapidus

According to our database, Alla L. Lapidus authored at least 15 papers between 2009 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

MGnify: the microbiome analysis resource in 2020.

Alex L. Mitchell, Alexandre Almeida, Martin Beracochea, Miguel A. Boland, Josephine Burgin, Guy Cochrane, Michael R. Crusoe, Varsha Kale, Simon C. Potter, Lorna J. Richardson, Ekaterina A. Sakharova, Maxim Scheremetjew, Anton I. Korobeynikov, Alexander Shlemov, Olga Kunyavskaya, Alla L. Lapidus, Robert D. Finn

Nucleic Acids Res., 2020

Extending rnaSPAdes functionality for hybrid transcriptome assembly.

Andrey D. Prjibelski, Giuseppe D. Puglia, Dmitry Antipov, Elena Bushmanova, Daniela Giordano, Alla Mikheenko, Domenico Vitale, Alla L. Lapidus

BMC Bioinform., 2020

Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.

Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus

BMC Bioinform., 2020

CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.

Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus

BMC Bioinform., 2020

Metaviral SPAdes: assembly of viruses from metagenomic data.

Dmitry Antipov, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner

Bioinform., 2020

2019

Sequence Analysis.

Andrey D. Prjibelski, Anton I. Korobeynikov, Alla L. Lapidus

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction.

Vasily Ershov, Artem Tarasov, Alla L. Lapidus, Anton I. Korobeynikov

J. Comput. Biol., 2019

2016

rnaQUAST: a quality assessment tool for <i>de novo</i> transcriptome assemblies.

Elena Bushmanova, Dmitry Antipov, Alla L. Lapidus, Vladimir Suvorov, Andrey D. Prjibelski

Bioinform., 2016

plasmidSPAdes: assembling plasmids from whole genome sequencing data.

Dmitry Antipov, Nolan Hartwick, Max W. Shen, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner

Bioinform., 2016

2015

IgSimulator: a versatile immunosequencing simulator.

Yana Safonova, Alla L. Lapidus, Jennie Lill

Bioinform., 2015

IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis.

Yana Safonova, Stefano Bonissone, Eugene Kurpilyansky, Ekaterina Starostina, Alla L. Lapidus, Jeremy Stinson, Laura DePalatis, Wendy Sandoval, Jennie Lill, Pavel A. Pevzner

Bioinform., 2015

2014

ExSPAnder: a universal repeat resolver for DNA fragment assembly.

Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner

Bioinform., 2014

2013

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products.

Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner

J. Comput. Biol., 2013

Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads.

Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner

Proceedings of the Research in Computational Molecular Biology, 2013

2009

Frameshift detection in prokaryotic genomic sequences.

Andrey Kislyuk, Alexandre Lomsadze, Alla L. Lapidus, Mark Borodovsky

Int. J. Bioinform. Res. Appl., 2009