Ali Sharifi-Zarchi

According to our database, Ali Sharifi-Zarchi authored at least 12 papers between 2014 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Novel Pipeline for Diagnosing Acute Lymphoblastic Leukemia Sensitive to Related Biomarkers.

Amirhossein Askari-Farsangi, Ali Sharifi-Zarchi, Mohammad Hossein Rohban

CoRR, 2023

2021

StrongestPath: a Cytoscape application for protein-protein interaction analysis.

Zaynab Mousavian, Mehran Khodabandeh, Ali Sharifi-Zarchi, Alireza Nadafian, Alireza Mahmoudi

BMC Bioinform., 2021

2020

PyGTED: Python Application for Computing Graph Traversal Edit Distance.

Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz

J. Comput. Biol., 2020

Graph Traversal Edit Distance and Extensions.

Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz

J. Comput. Biol., 2020

FAME: fast and memory efficient multiple sequences alignment tool through compatible chain of roots.

Etminan Naznooshsadat, Elham Parvinnia, Ali Sharifi-Zarchi

Bioinform., 2020

2019

The assessment of efficient representation of drug features using deep learning for drug repositioning.

Mahroo Moridi, Marzieh Ghadirinia, Ali Sharifi-Zarchi, Fatemeh Zare-Mirakabad

BMC Bioinform., 2019

Enhanced Waddington landscape model with cell-cell communication can explain molecular mechanisms of self-organization.

Hosein Fooladi, Parsa Moradi, Ali Sharifi-Zarchi, Babak Hossein Khalaj

Bioinform., 2019

2018

Inferring Molecular Pathology and micro-RNA Transcriptome from mRNA Profiles of Cancer Biopsies through Deep Multi-Task Learning.

Behrooz Azarkhalili, Ali Saberi, Hamidreza Chitsaz, Ali Sharifi-Zarchi

CoRR, 2018

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks.

Farzad Abdolhosseini, Behrooz Azarkhalili, Abbas Maazallahi, Aryan Kamal, Seyed Abolfazl Motahari, Ali Sharifi-Zarchi, Hamidreza Chitsaz

CoRR, 2018

GTED: Graph Traversal Edit Distance.

Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz

Proceedings of the Research in Computational Molecular Biology, 2018

2015

Increased robustness of early embryogenesis through collective decision-making by key transcription factors.

Ali Sharifi-Zarchi, Mehdi Totonchi, Keynoush Khaloughi, Razieh Karamzadeh, Marcos J. Araúzo-Bravo, Hossein Baharvand, Ruzbeh Tusserkani, Hamid Pezeshk, Hamidreza Chitsaz, Mehdi Sadeghi

BMC Syst. Biol., 2015

2014

ARYANA: Aligning Reads by Yet Another Approach.

Milad Gholami, Aryan Arbabi, Ali Sharifi-Zarchi, Hamidreza Chitsaz, Mehdi Sadeghi

BMC Bioinform., 2014