Ali Bashir

According to our database, Ali Bashir authored at least 14 papers between 2007 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Automated Deep Aberration Detection from Chromosome Karyotype Images.

Zahra Shamsi, Drew Bryant, Jacob Wilson, Xiaoyu Qu, Avinava Dubey, Konik Kothari, Mostafa Dehghani, Mariya Chavarha, Valerii Likhosherstov, Brian Williams, Michael Frumkin, Fred Appelbaum, Krzysztof Choromanski, Ali Bashir, Min Fang

CoRR, 2022

2020

MsPAC: a tool for haplotype-phased structural variant detection.

Oscar L. Rodriguez, Anna M. Ritz, Andrew J. Sharp, Ali Bashir

Bioinform., 2020

2016

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing.

Volkan Sevim, Ali Bashir, Chen-Shan Chin, Karen H. Miga

Bioinform., 2016

2014

Detecting epigenetic motifs in low coverage and metagenomics settings.

Noam D. Beckmann, Sashank Karri, Gang Fang, Ali Bashir

BMC Bioinform., 2014

Resolving complex tandem repeats with long reads.

Ajay Ummat, Ali Bashir

Bioinform., 2014

Characterization of structural variants with single molecule and hybrid sequencing approaches.

Anna M. Ritz, Ali Bashir, Suzanne S. Sindi, David Hsu, Iman Hajirasouliha, Benjamin J. Raphael

Bioinform., 2014

2011

Strobe sequence design for haplotype assembly.

Christine Lo, Ali Bashir, Vikas Bansal, Vineet Bafna

BMC Bioinform., 2011

Workshop: Characterization of structural variants with next generation DNA sequencing.

Benjamin J. Raphael, Suzanne S. Sindi, Anna M. Ritz, Ali Bashir

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010

Optimizing PCR Assays for DNA-Based Cancer Diagnostics.

Ali Bashir, Qing Lu, Dennis Carson, Benjamin J. Raphael, Yu-Tsueng Liu, Vineet Bafna

J. Comput. Biol., 2010

Structural variation analysis with strobe reads.

Anna M. Ritz, Ali Bashir, Benjamin J. Raphael

Bioinform., 2010

2009

Computational methods for analyzing and detecting genomic structural variation : applications to cancer.

Ali Bashir

PhD thesis, 2009

A geometric approach for classification and comparison of structural variants.

Suzanne S. Sindi, Elena Helman, Ali Bashir, Benjamin J. Raphael

Bioinform., 2009

2008

Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer.

Ali Bashir, Stanislav Volik, Colin C. Collins, Vineet Bafna, Benjamin J. Raphael

PLoS Comput. Biol., 2008

2007

Optimization of primer design for the detection of variable genomic lesions in cancer.

Ali Bashir, Yu-Tsueng Liu, Benjamin J. Raphael, Dennis Carson, Vineet Bafna

Bioinform., 2007