Alexis Allot

Orcid: 0000-0002-2706-9054

According to our database1, Alexis Allot authored at least 27 papers between 2013 and 2024.

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Bibliography

2024
Towards Accountable AI-Assisted Eye Disease Diagnosis: Workflow Design, External Validation, and Continual Learning.
CoRR, 2024

PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge.
CoRR, 2024

2023
Comprehensively identifying Long Covid articles with human-in-the-loop machine learning.
Patterns, January, 2023

LitCovid in 2022: an information resource for the COVID-19 literature.
Nucleic Acids Res., January, 2023

2022
LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Comprehensive identification of Long Covid articles with human-in-the-loop machine learning.
CoRR, 2022

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
CoRR, 2022

tmVar 3.0: an improved variant concept recognition and normalization tool.
Bioinform., 2022

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
Database J. Biol. Databases Curation, 2022


2021
LitSuggest: a web-based system for literature recommendation and curation using machine learning.
Nucleic Acids Res., 2021

LitCovid: an open database of COVID-19 literature.
Nucleic Acids Res., 2021

Multimodal, multitask, multiattention (M3) deep learning detection of reticular pseudodrusen: Toward automated and accessible classification of age-related macular degeneration.
J. Am. Medical Informatics Assoc., 2021

Long Covid: A Comprehensive Collection of Articles Regarding Long-Haul Symptoms in COVID-19 Survivors.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

AM2BERT: attention guided and regularized transformer-based multi-label classification model for COVID-19 literature curation.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
Predicting risk of late age-related macular degeneration using deep learning.
npj Digit. Medicine, 2020

Multi-modal, multi-task, multi-attention (M3) deep learning detection of reticular pseudodrusen: towards automated and accessible classification of age-related macular degeneration.
CoRR, 2020

Artificial Intelligence (AI) in Action: Addressing the COVID-19 Pandemic with Natural Language Processing (NLP).
CoRR, 2020

Navigating the landscape of COVID-19 research through literature analysis: A bird's eye view.
CoRR, 2020

2019
PubTator central: automated concept annotation for biomedical full text articles.
Nucleic Acids Res., 2019

LitSense: making sense of biomedical literature at sentence level.
Nucleic Acids Res., 2019

A Text-Mining System for Concept Annotation in Biomedical Full Text Articles.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.
Nucleic Acids Res., 2018

LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC.
Nucleic Acids Res., 2018

2015
MyGeneFriends : vers un nouveau rapport entre chercheurs et mégadonnées. (MyGeneFriends : towards a new relationship between researchers and big data).
PhD thesis, 2015

OrthoInspector 2.0: Software and database updates.
Bioinform., 2015

2013
PARSEC: PAtteRn SEarch and Contextualization.
Bioinform., 2013


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