Alexei J. Drummond

According to our database, Alexei J. Drummond authored at least 20 papers between 2001 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

LinguaPhylo: A probabilistic model specification language for reproducible phylogenetic analyses.

Alexei J. Drummond, Kylie Chen, Fábio K. Mendes, Dong Xie

PLoS Comput. Biol., 2023

2021

Bayesian inference of the climbing grade scale.

Alexei J. Drummond, Alex Popinga

CoRR, 2021

2020

Bayesian inference and comparison of stochastic transcription elongation models.

Jordan Douglas, Richard Kingston, Alexei J. Drummond

PLoS Comput. Biol., 2020

2019

Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration.

Jing Yang, Nicola F. Müller, Remco R. Bouckaert, Bing Xu, Alexei J. Drummond

PLoS Comput. Biol., 2019

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.

Remco R. Bouckaert, Timothy G. Vaughan, Joëlle Barido-Sottani, Sebastián Duchêne, Mathieu Fourment, Alexandra Gavryushkina, Joseph Heled, Graham Jones, Denise Kühnert, Nicola De Maio, Michael Matschiner, Fábio K. Mendes, Nicola F. Müller, Huw A. Ogilvie, Louis du Plessis, Alex Popinga, Andrew Rambaut, David A. Rasmussen, Igor Siveroni, Marc A. Suchard, Chieh-Hsi Wu, Dong Xie, Chi Zhang, Tanja Stadler, Alexei J. Drummond

PLoS Comput. Biol., 2019

2014

The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates.

Bram Vrancken, Andrew Rambaut, Marc A. Suchard, Alexei J. Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey

PLoS Comput. Biol., 2014

Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration.

Alexandra Gavryushkina, David Welch, Tanja Stadler, Alexei J. Drummond

PLoS Comput. Biol., 2014

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis.

Remco R. Bouckaert, Joseph Heled, Denise Kühnert, Timothy G. Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A. Suchard, Andrew Rambaut, Alexei J. Drummond

PLoS Comput. Biol., 2014

Efficient Bayesian inference under the structured coalescent.

Timothy G. Vaughan, Denise Kühnert, Alex Popinga, David Welch, Alexei J. Drummond

Bioinform., 2014

2013

Recursive algorithms for phylogenetic tree counting.

Alexandra Gavryushkina, David Welch, Alexei J. Drummond

Algorithms Mol. Biol., 2013

Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework.

Bram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey

Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

2012

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data.

Matthew Kearse, Richard Moir, Amy Wilson, Steven Stones-Havas, Matthew Cheung, Shane S. Sturrock, Simon Buxton, Alex Cooper, Sidney Markowitz, Chris Duran, Tobias Thierer, Bruce Ashton, Peter L. Meintjes, Alexei J. Drummond

Bioinform., 2012

2010

A retrodictive stochastic simulation algorithm.

Timothy G. Vaughan, Peter D. Drummond, Alexei J. Drummond

J. Comput. Phys., 2010

2009

Bayesian Phylogeography Finds Its Roots.

Philippe Lemey, Andrew Rambaut, Alexei J. Drummond, Marc A. Suchard

PLoS Comput. Biol., 2009

2008

Clock-constrained tree proposal operators in Bayesian phylogenetic inference.

Sebastian Höhna, Michael Defoin-Platel, Alexei J. Drummond

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

2007

Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics.

Philippe Lemey, Sergei L. Kosakovsky Pond, Alexei J. Drummond, Oliver G. Pybus, Beth Shapiro, Helena Barroso, Nuno Taveira, Andrew Rambaut

PLoS Comput. Biol., 2007

2005

Bayesian coestimation of phylogeny and sequence alignment.

Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein

BMC Bioinform., 2005

2004

A Brief Introduction to the Phylogentics Analysis Library V1.5.

Matthew Goode, Korbinian Strimmer, Alexei J. Drummond, Ed Buckler, Allen G. Rodrigo

Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC 2004), 2004

2003

Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model.

Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein

Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003

2001

PAL: an object-oriented programming library for molecular evolution and phylogenetics.

Alexei J. Drummond, Korbinian Strimmer

Bioinform., 2001