Alexandre P. Francisco

According to our database, Alexandre P. Francisco authored at least 73 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

A multi-objective mixed integer linear programming model for thesis defence scheduling.

João Almeida, Daniel Santos, José Rui Figueira, Alexandre P. Francisco

Eur. J. Oper. Res., January, 2024

phyloDB: A framework for large-scale phylogenetic analysis of sequence based typing data.

Bruno Lourenço, Cátia Vaz, Miguel E. Coimbra, Alexandre P. Francisco

SoftwareX, 2024

Accelerating Graph Neural Networks with a Novel Matrix Compression Format.

João Nuno Ferreira Alves, Samir Moustafa, Siegfried Benkner, Alexandre P. Francisco, Wilfried N. Gansterer, Luís M. S. Russo

CoRR, 2024

A modular and scalable web platform for computational phylogenetics.

Nyckollas Brandão, André Jesus, André Páscoa, Alexandre P. Francisco, Mário Ramirez, Cátia Vaz

CoRR, 2024

Computing RF Tree Distance over Succinct Representations.

António Pedro Branco, Cátia Vaz, Alexandre P. Francisco

Algorithms, 2024

2023

Phylogenetic tree distance computation over succinct representations.

António Pedro Branco, Cátia Vaz, Alexandre P. Francisco

CoRR, 2023

phyloDB: A framework for large-scale phylogenetic analysis.

Bruno Lourenço, Cátia Vaz, Miguel E. Coimbra, Alexandre P. Francisco

CoRR, 2023

On Finding Optimal (Dynamic) Arborescences.

Joaquim Espada, Alexandre P. Francisco, Tatiana Rocher, Luís M. S. Russo, Cátia Vaz

Algorithms, 2023

A Novel Triangular Space-Filling Curve for Cache-Oblivious In-Place Transposition of Square Matrices.

João Nuno Ferreira Alves, Luís M. S. Russo, Alexandre P. Francisco, Siegfried Benkner

Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2023

2022

Cache-oblivious Hilbert Curve-based Blocking Scheme for Matrix Transposition.

João Nuno Ferreira Alves, Luís Manuel Silveira Russo, Alexandre P. Francisco

ACM Trans. Math. Softw., December, 2022

Correction to: Graph Compression for Adjacency-Matrix Multiplication.

Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro

SN Comput. Sci., 2022

Graph Compression for Adjacency-Matrix Multiplication.

Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro

SN Comput. Sci., 2022

VeilGraph: incremental graph stream processing.

Miguel E. Coimbra, Sérgio Esteves, Alexandre P. Francisco, Luís Veiga

J. Big Data, 2022

Order-preserving pattern matching indeterminate strings.

Luís M. S. Russo, Diogo M. Costa, Rui Henriques, Hideo Bannai, Alexandre P. Francisco

Inf. Comput., 2022

A practical succinct dynamic graph representation.

Miguel E. Coimbra, Joana Hrotkó, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro

Inf. Comput., 2022

2021

An analysis of the graph processing landscape.

Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga

J. Big Data, 2021

Small Longest Tandem Scattered Subsequences.

Luís M. S. Russo, Alexandre P. Francisco

Sci. Ann. Comput. Sci., 2021

Evolution of collective fairness in complex networks through degree-based role assignment.

Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco, Fernando P. Santos

CoRR, 2021

Eliciting Fairness in N-Player Network Games through Degree-Based Role Assignment.

Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco, Fernando P. Santos

Complex., 2021

Distance-based phylogenetic inference from typing data: a unifying view.

Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco

Briefings Bioinform., 2021

Eliciting Fairness in Multiplayer Bargaining through Network-Based Role Assignment.

Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco, Fernando P. Santos

Proceedings of the AAMAS '21: 20th International Conference on Autonomous Agents and Multiagent Systems, 2021

2020

Hardness of Modern Games.

Diogo M. Costa, Alexandre P. Francisco, Luís M. S. Russo

CoRR, 2020

Incremental Multiple Longest Common Sub-Sequences.

Luís M. S. Russo, Alexandre P. Francisco, Tatiana Rocher

CoRR, 2020

Sparsifying parity-check matrices.

Luís M. S. Russo, Tobias Dietz, José Rui Figueira, Alexandre P. Francisco, Stefan Ruzika

Appl. Soft Comput., 2020

Approximating Optimal Bidirectional Macro Schemes.

Luís M. S. Russo, Ana Sofia D. Correia, Gonzalo Navarro, Alexandre P. Francisco

Proceedings of the Data Compression Conference, 2020

On Dynamic Succinct Graph Representations.

Miguel E. Coimbra, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro

Proceedings of the Data Compression Conference, 2020

2019

Distributed graphs: in search of fast, low-latency, resource-efficient, semantics-rich Big-Data processing.

Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga

CoRR, 2019

2018

Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients.

Miguel Monteiro, Ana Catarina Fonseca, Ana Teresa Freitas, Teresa Pinho e Melo, Alexandre P. Francisco, José M. Ferro, Arlindo L. Oliveira

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Large-Scale Simulations of Bacterial Populations Over Complex Networks.

Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco

J. Comput. Biol., 2018

SpliceTAPyR - An Efficient Method for Transcriptome Alignment.

Andreia Sofia Teixeira, Francisco Fernandes, Alexandre P. Francisco

Int. J. Found. Comput. Sci., 2018

GraphBolt: Streaming Graph Approximations on Big Data.

Miguel E. Coimbra, Renato Rosa, Sérgio Esteves, Alexandre P. Francisco, Luís Veiga

CoRR, 2018

Fast phylogenetic inference from typing data.

João A. Carriço, Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Bruno Ribeiro-Gonçalves, Cátia Vaz

Algorithms Mol. Biol., 2018

Linking and Cutting Spanning Trees.

Luís M. S. Russo, Andreia Sofia Teixeira, Alexandre P. Francisco

Algorithms, 2018

Gelly-scheduling: distributed graph processing for service placement in community networks.

Miguel E. Coimbra, Mennan Selimi, Alexandre P. Francisco, Felix Freitag, Luís Veiga

Proceedings of the 33rd Annual ACM Symposium on Applied Computing, 2018

Exploiting Computation-Friendly Graph Compression Methods for Adjacency-Matrix Multiplication.

Alexandre P. Francisco, Travis Gagie, Susana Ladra, Gonzalo Navarro

Proceedings of the 2018 Data Compression Conference, 2018

Order-Preserving Pattern Matching Indeterminate Strings.

Rui Henriques, Alexandre P. Francisco, Luís M. S. Russo, Hideo Bannai

Proceedings of the Annual Symposium on Combinatorial Pattern Matching, 2018

Capturing Financial Volatility Through Simple Network Measures.

Pedro C. Souto, Andreia Sofia Teixeira, Alexandre P. Francisco, Francisco C. Santos

Proceedings of the Complex Networks and Their Applications VII, 2018

2017

Exploiting Computation-Friendly Graph Compression Methods.

Alexandre P. Francisco, Travis Gagie, Susana Ladra, Gonzalo Navarro

CoRR, 2017

Beyond NGS data sharing and towards open science.

Bruno Dantas, Calmenelias Fleitas, Alexandre P. Francisco, José Simão, Cátia Vaz

CoRR, 2017

Study on Resource Efficiency of Distributed Graph Processing.

Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga

CoRR, 2017

Gelly-Scheduling: Distributed Graph Processing for Network Service Placement.

Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga

CoRR, 2017

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods.

Marta Nascimento, Adriano Sousa, Mário Ramirez, Alexandre P. Francisco, João A. Carriço, Cátia Vaz

Bioinform., 2017

Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time.

Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Cátia Vaz

Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017

Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks.

Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco

Proceedings of the Algorithms and Architectures for Parallel Processing, 2017

Dynamic Phylogenetic Inference for Sequence-based Typing Data.

Alexandre P. Francisco, Marta Nascimento, Cátia Vaz

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

NGSPipes: Fostering Reproducibility and Scalability in Biosciences.

Bruno Dantas, Calmenelias Fleitas, Alexandre Almeida, João Forja, Alexandre P. Francisco, José Simão, Cátia Vaz

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016

Evaluating the impact of k-anonymization on the inference of interaction networks.

Pedro Rijo, Alexandre P. Francisco, Mário J. Silva

Trans. Data Priv., 2016

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees.

Bruno Ribeiro-Gonçalves, Alexandre P. Francisco, Cátia Vaz, Mário Ramirez, João André Carriço

Nucleic Acids Res., 2016

Extending quick hypervolume.

Luís M. S. Russo, Alexandre P. Francisco

J. Heuristics, 2016

Spanning Edge Betweenness in Practice.

Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco

Proceedings of the Complex Networks VII, 2016

Influence and Sentiment Homophily on Twitter Social Circles.

Hugo Lopes, Helena Sofia Pinto, Alexandre P. Francisco

Proceedings of the Complex Networks VII, 2016

2015

Betweenness centrality in Delay Tolerant Networks: A survey.

Naércio Magaia, Alexandre P. Francisco, Paulo Rogério Pereira, Miguel Correia

Ad Hoc Networks, 2015

Techniques for Brain Functional Connectivity Analysis from High Resolution Imaging.

A. C. Leitão, Alexandre Paulo Francisco, Rodolfo Abreu, Sandro Nunes, Juliana Rodrigues, Patrícia Figueiredo, Lawrence L. Wald, Marta Bianciardi, L. Miguel Silveira

Proceedings of the Complex Networks VI, 2015

2014

Quick Hypervolume.

Luís M. S. Russo, Alexandre P. Francisco

IEEE Trans. Evol. Comput., 2014

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in <i>Saccharomyces cerevisiae</i>.

Miguel Cacho Teixeira, Pedro Tiago Monteiro, Joana Fernandes Guerreiro, Joana Pinho Gonçalves, Nuno Pereira Mira, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Margarida Palma, Catarina Costa, Alexandre Paulo Francisco, Sara Cordeiro Madeira, Arlindo Limede Oliveira, Ana Teresa Freitas, Isabel Sá-Correia

Nucleic Acids Res., 2014

TypOn: the microbial typing ontology.

Cátia Vaz, Alexandre P. Francisco, Mickael Silva, Keith A. Jolley, James E. Bray, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço

J. Biomed. Semant., 2014

Evaluating the Impact of Anonymization on Large Interaction Network Datasets.

Mário J. Silva, Pedro Rijo, Alexandre P. Francisco

Proceedings of the First International Workshop on Privacy and Secuirty of Big Data, 2014

Real-Time Integration of Building Energy Data.

Diogo Anjos, Paulo Carreira, Alexandre P. Francisco

Proceedings of the 2014 IEEE International Congress on Big Data, Anchorage, AK, USA, June 27, 2014

2012

Mining query log graphs towards a query folksonomy.

Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira

Concurr. Comput. Pract. Exp., 2012

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.

Alexandre P. Francisco, Cátia Vaz, Pedro T. Monteiro, José Melo-Cristino, Mário Ramirez, João A. Carriço

BMC Bioinform., 2012

Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis.

Susana Vinga, Alexandra M. Carvalho, Alexandre P. Francisco, Luís M. S. Russo, Jonas S. Almeida

Algorithms Mol. Biol., 2012

2011

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in <i>Saccharomyces cerevisiae</i> through a web services interface.

Dário Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Alexandre P. Francisco, Sara C. Madeira, Ricardo Santos Aires, Arlindo L. Oliveira, Isabel Sá-Correia, Ana T. Freitas

Nucleic Acids Res., 2011

TFRank: network-based prioritization of regulatory associations underlying transcriptional responses.

Joana P. Gonçalves, Alexandre P. Francisco, Nuno P. Mira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira, Sara C. Madeira

Bioinform., 2011

Baiacu: A Tool for the Visual Analysis of the <i>Saccharomyces Cerevisiae</i> Regulatory Network.

Ricardo Santos Aires, João A. Carriço, Alexandre P. Francisco, Sara C. Madeira

Proceedings of the 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2011

2010

Mining Large Query Induced Graphs towards a Hierarchical Query Folksonomy.

Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira

Proceedings of the String Processing and Information Retrieval, 2010

An Ontology and a REST API for Sequence Based Microbial Typing Data.

João Almeida, João Tiple, Mário Ramirez, José Melo-Cristino, Cátia Vaz, Alexandre P. Francisco, João A. Carriço

Proceedings of the Bioinformatics for Personalized Medicine, 2010

On Community Detection in Very Large Networks.

Alexandre P. Francisco, Arlindo L. Oliveira

Proceedings of the Complex Networks - Second International Workshop, 2010

Fully Generalized Graph Cores.

Alexandre P. Francisco, Arlindo L. Oliveira

Proceedings of the Complex Networks - Second International Workshop, 2010

Using graph modularity analysis to identify transcription factor binding sites.

Alexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach.

Alexandre P. Francisco, Miguel M. F. Bugalho, Mário Ramirez, João A. Carriço

BMC Bioinform., 2009

2008

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in <i>Saccharomyces cerevisiae</i>.

Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Hélio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas

Nucleic Acids Res., 2008

Clique Analysis of Query Log Graphs.

Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira

Proceedings of the String Processing and Information Retrieval, 2008

Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph.

Alexandre P. Francisco, Arlindo L. Oliveira, Ana T. Freitas

Proceedings of the Bioinformatics Research and Applications, 2008