Alexandre M. J. J. Bonvin
Orcid: 0000-0001-7369-1322
According to our database1,
Alexandre M. J. J. Bonvin
authored at least 30 papers
between 2006 and 2023.
Collaborative distances:
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Bibliography
2023
DeepRank-GNN: a graph neural network framework to learn patterns in protein-protein interfaces.
Bioinform., January, 2023
2021
Shape-Restrained Modeling of Protein-Small-Molecule Complexes with High Ambiguity Driven DOCKing.
J. Chem. Inf. Model., 2021
Database J. Biol. Databases Curation, 2021
2020
iScore: An MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines.
SoftwareX, 2020
Coupling enhanced sampling of the apo-receptor with template-based ligand conformers selection: performance in pose prediction in the D3R Grand Challenge 4.
J. Comput. Aided Mol. Des., 2020
iScore: a novel graph kernel-based function for scoring protein-protein docking models.
Bioinform., 2020
proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking.
Bioinform., 2020
Computational approaches to therapeutic antibody design: established methods and emerging trends.
Briefings Bioinform., 2020
2019
Holo-like and Druggable Protein Conformations from Enhanced Sampling of Binding Pocket Volume and Shape.
J. Chem. Inf. Model., 2019
J. Comput. Aided Mol. Des., 2019
Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server.
Bioinform., 2019
PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes.
Bioinform., 2019
2018
Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.
J. Comput. Aided Mol. Des., 2018
2017
Template-based protein-protein docking exploiting pairwise interfacial residue restraints.
Briefings Bioinform., 2017
2016
Combination of Ambiguous and Unambiguous Data in the Restraint-driven Docking of Flexible Peptides with HADDOCK: The Binding of the Spider Toxin PcTx1 to the Acid Sensing Ion Channel (ASIC) 1a.
J. Chem. Inf. Model., 2016
PRODIGY: a web server for predicting the binding affinity of protein-protein complexes.
Bioinform., 2016
2015
DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes.
Bioinform., 2015
2014
HADDOCK<sub>2P2I</sub>: A Biophysical Model for Predicting the Binding Affinity of Protein-Protein Interaction Inhibitors.
J. Chem. Inf. Model., 2014
2012
Dynamic Control of Selectivity in the Ubiquitination Pathway Revealed by an ASP to GLU Substitution in an Intra-Molecular Salt-Bridge Network.
PLoS Comput. Biol., 2012
2011
Proceedings of the 3rd International Workshop on Science Gateways for Life Sciences, 2011
2010
SAMPLEX: Automatic mapping of perturbed and unperturbed regions of proteins and complexes.
BMC Bioinform., 2010
2009
2006
Intramolecular surface contacts contain information about protein-protein interface regions.
Bioinform., 2006
Bioinform., 2006