Alexander Zelikovsky

Orcid: 0000-0003-4424-4691

According to our database1, Alexander Zelikovsky authored at least 100 papers between 1993 and 2024.

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Bibliography

2024
Community Structure and Temporal Dynamics of Viral Epistatic Networks Allow for Early Detection of Emerging Variants with Altered Phenotypes.
Proceedings of the Research in Computational Molecular Biology, 2024

2023
Simulating Tumor Evolution from scDNA-Seq as an Accumulation of both SNVs and CNAs.
Proceedings of the Bioinformatics Research and Applications - 19th International Symposium, 2023

Genetic Algorithm with Evolutionary Jumps.
Proceedings of the Bioinformatics Research and Applications - 19th International Symposium, 2023

2021
An SVM Based Approach to Study the Racial Disparity in Triple-Negative Breast Cancer.
Proceedings of the Computational Advances in Bio and Medical Sciences: 11th International Conference, 2021

2019
Workshop on Computational Advances in Molecular Epidemiology.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018
ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017
Classification of HCV infections through sequence image normalization.
Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017

CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2015
GaussianCpG: A Gaussian model for detection of human CpG island.
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015

2012
Distributed Algorithms for TDMA Link Scheduling in Sensor Networks.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

Workshop: A maximum likelihood method for quasispecies spectrum assembly.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

Scalable genome scaffolding using integer linear programming.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data.
Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011

Invited: Metabolic network alignments.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Poster: Haplotype discovery from high-throughput sequencing data.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Poster: Scaffolding draft genomes using paired sequencing data.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Poster: ViSpA: Viral spectrum assembling method.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010
Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data.
Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010

A 3/2-Approximation Algorithm for Generalized Steiner Trees in Complete Graphs with Edge Lengths 1 and 2.
Proceedings of the Algorithms and Computation - 21st International Symposium, 2010

Fixed-Parameter Tractable Combinatorial Algorithms for Metabolic Networks Alignments.
Proceedings of the ICDMW 2010, 2010

Efficient Alignments of Metabolic Networks with Bounded Treewidth.
Proceedings of the ICDMW 2010, 2010

WS-GraphMatching: a web service tool for graph matching.
Proceedings of the 19th ACM Conference on Information and Knowledge Management, 2010

2009
Genotype Tagging with Limited Overfitting.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2009

1.25-Approximation Algorithm for Steiner Tree Problem with Distances 1 and 2.
Proceedings of the Algorithms and Data Structures, 11th International Symposium, 2009

Mean Square Residue Biclustering with Missing Data and Row Inversions.
Proceedings of the Bioinformatics Research and Applications, 5th International Symposium, 2009

2008
HCV Quasispecies Assembly Using Network Flows.
Proceedings of the Bioinformatics Research and Applications, 2008

Fast Alignments of Metabolic Networks.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence.
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

Risk Factor Searching Heuristics for SNP Case-Control Studies.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

Homomorphisms of Multisource Trees into Networks with Applications to Metabolic Pathways.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Discrete Methods for Association Search and Status Prediction in Genotype Case-Control Studies.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Combinatorial Methods for Disease Association Search and Susceptibility Prediction.
Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

Maximum Lifetime of Sensor Networks with Adjustable Sensing Range.
Proceedings of the Seventh International Conference on Software Engineering, 2006

DEEPS: Deterministic Energy-Efficient Protocol for Sensor networks.
Proceedings of the Seventh International Conference on Software Engineering, 2006

Fill for shallow trench isolation CMP.
Proceedings of the 2006 International Conference on Computer-Aided Design, 2006

Tag SNP Selection Based on Multivariate Linear Regression.
Proceedings of the Computational Science, 2006

Phasing of 2-SNP Genotypes Based on Non-random Mating Model.
Proceedings of the Computational Science, 2006

Genotype susceptibility and integrated risk factors for complex diseases.
Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006

Haplotype tagging using support vector machines.
Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006

Hybrid SVM Kernels for Protein Secondary Structure Prediction.
Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006

Combinatorial Search Methods for Multi-SNP Disease Association.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

Applications of the Linear Matroid Parity Algorithm to Approximating Steiner Trees.
Proceedings of the Computer Science, 2006

2005
GKM over large MANET.
Proceedings of the 6th ACIS International Conference on Software Engineering, 2005

Energy-efficient continuous and event-driven monitoring.
Proceedings of the IEEE 2nd International Conference on Mobile Adhoc and Sensor Systems, 2005

Phasing and Missing Data Recovery in Family Trios.
Proceedings of the Computational Science, 2005

Bright-Field AAPSM Conflict Detection and Correction.
Proceedings of the 2005 Design, 2005

2004
Power efficient monitoring management in sensor networks.
Proceedings of the 2004 IEEE Wireless Communications and Networking Conference , 2004

Linear Reduction for Haplotype Inference.
Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004

SyD: A Middleware Testbed for Collaborative Applications over Small Heterogeneous Devices and Data Stores.
Proceedings of the Middleware 2004, 2004

Multi-project reticle floorplanning and wafer dicing.
Proceedings of the 2004 International Symposium on Physical Design, 2004

The Polymatroid Steiner Problems.
Proceedings of the Algorithms and Computation, 15th International Symposium, 2004

Evaluation of the new OASIS format for layout fill compression.
Proceedings of the 2004 11th IEEE International Conference on Electronics, 2004

2003
Power efficient range assignment in ad-hoc wireless networks.
Proceedings of the 2003 IEEE Wireless Communications and Networking, 2003

Improved Approximation Algorithms for the Quality of Service Steiner Tree Problem.
Proceedings of the Algorithms and Data Structures, 8th International Workshop, 2003

Engineering a scalable placement heuristic for DNA probe arrays.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

Design Flow Enhancements for DNA Arrays.
Proceedings of the 21st International Conference on Computer Design (ICCD 2003), 2003

Evaluation of Placement Techniques for DNA Probe Array Layout.
Proceedings of the 2003 International Conference on Computer-Aided Design, 2003

Primal-dual algorithms for QoS multimedia multicast.
Proceedings of the Global Telecommunications Conference, 2003

Network Lifetime and Power Assignment in ad hoc Wireless Networks.
Proceedings of the Algorithms, 2003

Area Fill Generation With Inherent Data Volume Reduction.
Proceedings of the 2003 Design, 2003

Toward an Easy Programming Environment for Implementing Mobile Applications: A Fleet Application Case Study using SyD Middleware.
Proceedings of the 27th International Computer Software and Applications Conference (COMPSAC 2003): Design and Assessment of Trustworthy Software-Based Systems, 2003

Highly scalable algorithms for rectilinear and octilinear Steiner trees.
Proceedings of the 2003 Asia and South Pacific Design Automation Conference, 2003

2002
Border Length Minimization in DNA Array Design.
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

Floorplan Evaluation with Timing-Driven Global Wireplanning, Pin Assignment and Buffer/Wire Sizing.
Proceedings of the 7th Asia and South Pacific Design Automation Conference (ASP-DAC 2002), 2002

Closing the smoothness and uniformity gap in area fill synthesis.
Proceedings of 2002 International Symposium on Physical Design, 2002

Symmetric Connectivity with Minimum Power Consumption in Radio Networks.
Proceedings of the Foundations of Information Technology in the Era of Networking and Mobile Computing, 2002

Auctions with Buyer Preferences.
Proceedings of the Information Systems: The e-Business Challenge, 2002

Mobile Fleet Application using Soap and System on Devices (SYD) Middleware Technologies.
Proceedings of the IASTED International Conference on Communications, 2002

2001
Practical Approximation Algorithms for Separable Packing Linear Programs.
Proceedings of the Algorithms and Data Structures, 7th International Workshop, 2001

Practical approximation algorithms for zero- and bounded-skew trees.
Proceedings of the Twelfth Annual Symposium on Discrete Algorithms, 2001

Minimum-Buffered Routing of Non-Critical Nets for Slew Rate and Reliability Control.
Proceedings of the 2001 IEEE/ACM International Conference on Computer-Aided Design, 2001

Selecting forwarding neighbors in wireless Ad Hoc networks.
Proceedings of the 5th International Workshop on Discrete Algorithms and Methods for Mobile Computing and Communications (DIAL-M 2001), 2001

New graph bipartizations for double-exposure, bright field alternating phase-shift mask layout.
Proceedings of ASP-DAC 2001, 2001

Provably good global buffering by multi-terminal multicommodity flow approximation.
Proceedings of ASP-DAC 2001, 2001

Hierarchical dummy fill for process uniformity.
Proceedings of ASP-DAC 2001, 2001

2000
Improved Steiner tree approximation in graphs.
Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000

Provably Good Global Buffering Using an Available Buffer Block Plan.
Proceedings of the 2000 IEEE/ACM International Conference on Computer-Aided Design, 2000

Practical iterated fill synthesis for CMP uniformity.
Proceedings of the 37th Conference on Design Automation, 2000

Monte-Carlo algorithms for layout density control.
Proceedings of ASP-DAC 2000, 2000

1999
The T-join Problem in Sparse Graphs: Applications to Phase Assignment Problem in VLSI Mask Layout.
Proceedings of the Algorithms and Data Structures, 6th International Workshop, 1999

New and Exact Filling Algorithms for Layout Density Control.
Proceedings of the 12th International Conference on VLSI Design (VLSI Design 1999), 1999

Optimal phase conflict removal for layout of dark field alternating phase shifting masks.
Proceedings of the 1999 International Symposium on Physical Design, 1999

The associative-skew clock routing problem.
Proceedings of the 1999 IEEE/ACM International Conference on Computer-Aided Design, 1999

Optimization of Linear Placements for Wirelength Minimization with Free Sites.
Proceedings of the 1999 Conference on Asia South Pacific Design Automation, 1999

New Multilevel and Hierarchical Algorithms for Layout Density Control.
Proceedings of the 1999 Conference on Asia South Pacific Design Automation, 1999

1998
Filling and slotting: analysis and algorithms.
Proceedings of the 1998 International Symposium on Physical Design, 1998

On wirelength estimations for row-based placement.
Proceedings of the 1998 International Symposium on Physical Design, 1998

Moving-Target TSP and Related Problems.
Proceedings of the Algorithms, 1998

Improved Approximation Bounds for the Group Steiner Problem.
Proceedings of the 1998 Design, 1998

1997
Provably good routing tree construction with multi-port terminals.
Proceedings of the 1997 International Symposium on Physical Design, 1997

Approximating dense cases of covering problems.
Proceedings of the Network Design: Connectivity and Facilities Location, 1997

1995
Spanning Closed Trail and Hamiltonian Cycle in Grid Graphs.
Proceedings of the Algorithms and Computation, 6th International Symposium, 1995

1994
Approaching the 5/4-Approximation for Rectilinear Steiner Trees.
Proceedings of the Algorithms, 1994

1993
Faster Approximation Algorithms for the Rectilinear Steiner Tree Problem.
Proceedings of the Algorithms and Computation, 4th International Symposium, 1993

An approximation algorithm for weighted itk-polymatroids and the Steiner tree problem in graphs.
Proceedings of the 3rd Integer Programming and Combinatorial Optimization Conference, Erice, Italy, April 29, 1993


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