Alexander Schug

According to our database, Alexander Schug authored at least 20 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

pycofitness - Evaluating the fitness landscape of RNA and protein sequences.

Fabrizio Pucci, Mehari B. Zerihun, Marianne Rooman, Alexander Schug

Bioinform., February, 2024

2023

Development of a scoring function for comparing simulated and experimental tumor spheroids.

Julian Herold, Eric Behle, Jakob Rosenbauer, Jacopo Ferruzzi, Alexander Schug

PLoS Comput. Biol., March, 2023

Massively Parallel Genetic Optimization Through Asynchronous Propagation of Populations.

Oskar Taubert, Marie Weiel, Daniel Coquelin, Anis Farshian, Charlotte Debus, Alexander Schug, Achim Streit, Markus Götz

Proceedings of the High Performance Computing - 38th International Conference, 2023

2021

Structural Analysis of a Genetically Encoded FRET Biosensor by SAXS and MD Simulations.

Ines Reinartz, Mona Sarter, Julia Otten, Henning Höfig, Martina Pohl, Alexander Schug, Andreas M. Stadler, Jörg Fitter

Sensors, 2021

Dynamic particle swarm optimization of biomolecular simulation parameters with flexible objective functions.

Marie Weiel, Markus Götz, André Klein, Daniel Coquelin, Ralf Floca, Alexander Schug

Nat. Mach. Intell., 2021

pyrexMD: Workflow-Orientated Python Package for Replica Exchange Molecular Dynamics.

Arthur Voronin, Alexander Schug

J. Open Source Softw., 2021

JUWELS Booster - A Supercomputer for Large-Scale AI Research.

Stefan Kesselheim, Andreas Herten, Kai Krajsek, Jan Ebert, Jenia Jitsev, Mehdi Cherti, Michael Langguth, Bing Gong, Scarlet Stadtler, Amirpasha Mozaffari, Gabriele Cavallaro, Rocco Sedona, Alexander Schug, Alexandre Strube, Roshni Kamath, Martin G. Schultz, Morris Riedel, Thomas Lippert

Proceedings of the High Performance Computing - ISC High Performance Digital 2021 International Workshops, Frankfurt am Main, Germany, June 24, 2021

2020

Modeling of Wnt-mediated tissue patterning in vertebrate embryogenesis.

Jakob Rosenbauer, Chengting Zhang, Benjamin Mattes, Ines Reinartz, Kyle Wedgwood, Simone Schindler, Claude Sinner, Steffen Scholpp, Alexander Schug

PLoS Comput. Biol., 2020

Cells in Silico - introducing a high-performance framework for large-scale tissue modeling.

Marco Berghoff, Jakob Rosenbauer, Felix Hoffmann, Alexander Schug

BMC Bioinform., 2020

pydca v1.0: a comprehensive software for direct coupling analysis of RNA and protein sequences.

Mehari B. Zerihun, Fabrizio Pucci, Emanuel K. Peter, Alexander Schug

Bioinform., 2020

Loss Scheduling for Class-Imbalanced Image Segmentation Problems.

Oskar Taubert, Markus Götz, Alexander Schug, Achim Streit

Proceedings of the 19th IEEE International Conference on Machine Learning and Applications, 2020

2019

Rapid interpretation of small-angle X-ray scattering data.

Marie Weiel, Ines Reinartz, Alexander Schug

PLoS Comput. Biol., 2019

Optimization of the dielectric layer for electrowetting on dielectric.

Semih Turk, Alexander Schug, Reinhard Viga, Andreas Jupe, Holger Vogt

Integr., 2019

diSTruct v1.0: generating biomolecular structures from distance constraints.

Oskar Taubert, Ines Reinartz, Henning Meyerhenke, Alexander Schug

Bioinform., 2019

2017

Maxent-Stress Optimization of 3D Biomolecular Models.

Michael Wegner, Oskar Taubert, Alexander Schug, Henning Meyerhenke

Proceedings of the 25th Annual European Symposium on Algorithms, 2017

2014

Native structure-based modeling and simulation of biomolecular systems per mouse click.

Benjamin Lutz, Claude Sinner, Stefan Bozic, Ivan Kondov, Alexander Schug

BMC Bioinform., 2014

Integration of eSBMTools into the MoSGrid Portal Using the gUSE Technology.

Stefan Bozic, Jens Krüger, Claude Sinner, Benjamin Lutz, Alexander Schug, Ivan Kondov

Proceedings of the 6th International Workshop on Science Gateways, 2014

2013

eSBMTools 1.0: enhanced native structure-based modeling tools.

Benjamin Lutz, Claude Sinner, Geertje Heuermann, Abhinav Verma, Alexander Schug

Bioinform., 2013

2007

Massively Parallel All Atom Protein Folding in a Single Day.

Abhinav Verma, Srinivasa M. Gopal, Alexander Schug, Jung S. Oh, Konstantin V. Klenin, Kyu H. Lee, Wolfgang Wenzel

Proceedings of the Parallel Computing: Architectures, 2007

2004

Protein Structure Prediction with Stochastic Optimization Methods: Folding and Misfolding the Villin Headpiece.

Thomas Herges, Alexander Schug, Wolfgang Wenzel

Proceedings of the Computational Science and Its Applications, 2004