Alexander Schliep

According to our database, Alexander Schliep authored at least 64 papers between 1996 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Diverse Data Expansion with Semi-Supervised k-Determinantal Point Processes.

Simon Johansson, Ola Engkvist, Morteza Haghir Chehreghani, Alexander Schliep

Proceedings of the IEEE International Conference on Big Data, 2023

2021

Effects of network topology on the performance of consensus and distributed learning of SVMs using ADMM.

Shirin Tavara, Alexander Schliep

PeerJ Comput. Sci., 2021

Fast parallel construction of variable-length Markov chains.

Joel Gustafsson, Peter Norberg, Jan R. Qvick-Wester, Alexander Schliep

BMC Bioinform., 2021

Federated Learning of Oligonucleotide Drug Molecule Thermodynamics with Differentially Private ADMM-Based SVM.

Shirin Tavara, Alexander Schliep, Debabrota Basu

Proceedings of the Machine Learning and Principles and Practice of Knowledge Discovery in Databases, 2021

2020

Blood Glucose Prediction with Variance Estimation Using Recurrent Neural Networks.

John Martinsson, Alexander Schliep, Björn Eliasson, Olof Mogren

J. Heal. Informatics Res., 2020

2019

Bayesian optimization in ab initio nuclear physics.

Andreas Ekström, Christian Forssén, Christos Dimitrakakis, Devdatt P. Dubhashi, Håkan T. Johansson, Azam Sheikh Muhammad, Hans Salomonsson, Alexander Schliep

CoRR, 2019

Bayesian localization of CNV candidates in WGS data within minutes.

John Wiedenhoeft, Alex Cagan, Rimma Kozhemyakina, Rimma Gulevich, Alexander Schliep

Algorithms Mol. Biol., 2019

A Modeling Approach for Bioinformatics Workflows.

Laiz Heckmann Barbalho de Figueroa, Rema Salman, Jennifer Horkoff, Soni Chauhan, Marcela Davila, Francisco Gomes de Oliveira Neto, Alexander Schliep

Proceedings of the Practice of Enterprise Modeling, 2019

2018

An Optimization Problem Related to Bloom Filters with Bit Patterns.

Peter Damaschke, Alexander Schliep

Proceedings of the SOFSEM 2018: Theory and Practice of Computer Science - 44th International Conference on Current Trends in Theory and Practice of Computer Science, Krems, Austria, January 29, 2018

Effect of Network Topology on the Performance of ADMM-Based SVMs.

Shirin Tavara, Alexander Schliep

Proceedings of the 30th International Symposium on Computer Architecture and High Performance Computing, 2018

Statistical Sensor Modelling for Autonomous Driving Using Autoregressive Input-Output HMMs.

Edvin Listo Zec, Nasser Mohammadiha, Alexander Schliep

Proceedings of the 21st International Conference on Intelligent Transportation Systems, 2018

Clustering Vehicle Maneuver Trajectories Using Mixtures of Hidden Markov Models.

John Martinsson, Nasser Mohammadiha, Alexander Schliep

Proceedings of the 21st International Conference on Intelligent Transportation Systems, 2018

Automatic Blood Glucose Prediction with Confidence Using Recurrent Neural Networks.

John Martinsson, Alexander Schliep, Björn Eliasson, Christian Meijner, Simon Persson, Olof Mogren

Proceedings of the 3rd International Workshop on Knowledge Discovery in Healthcare Data co-located with the 27th International Joint Conference on Artificial Intelligence and the 23rd European Conference on Artificial Intelligence (IJCAI-ECAI 2018), 2018

2016

Fast Bayesian Inference of Copy Number Variants using Hidden Markov Models with Wavelet Compression.

John Wiedenhoeft, Eric Brugel, Alexander Schliep

PLoS Comput. Biol., 2016

Automatic learning of pre-miRNAs from different species.

Ivani de Oliveira Negrão Lopes, Alexander Schliep, André Carlos Ponce de Leon Ferreira de Carvalho

BMC Bioinform., 2016

2014

TreQ-CG: Clustering Accelerates High-Throughput Sequencing Read Mapping.

Md Pavel Mahmud, Alexander Schliep

CoRR, 2014

The discriminant power of RNA features for pre-miRNA recognition.

Ivani de Oliveira Negrão Lopes, Alexander Schliep, André Carlos Ponce de Leon Ferreira de Carvalho

BMC Bioinform., 2014

Turtle: Identifying frequent <i>k</i>-mers with cache-efficient algorithms.

Rajat Shuvro Roy, Debashish Bhattacharya, Alexander Schliep

Bioinform., 2014

2013

Turtle: Identifying frequent k-mers with cache-efficient algorithms

Rajat Shuvro Roy, Debashish Bhattacharya, Alexander Schliep

CoRR, 2013

2012

SLIQ: Simple Linear Inequalities for Efficient Contig Scaffolding.

Rajat Shuvro Roy, Kevin C. Chen, Anirvan M. Sengupta, Alexander Schliep

J. Comput. Biol., 2012

CLEVER: clique-enumerating variant finder.

Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schönhuth

Bioinform., 2012

Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious <i>kd</i>-trees.

Md Pavel Mahmud, John Wiedenhoeft, Alexander Schliep

Bioinform., 2012

2011

Selecting Oligonucleotide Probes for Whole-Genome Tiling Arrays with a Cross-Hybridization Potential.

Christoph Hafemeister, Roland Krause, Alexander Schliep

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Fast MCMC Sampling for Hidden Markov Models to Determine Copy Number Variations.

Md Pavel Mahmud, Alexander Schliep

BMC Bioinform., 2011

Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models.

Michael Seifert, Marc Strickert, Alexander Schliep, Ivo Grosse

Bioinform., 2011

Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions.

Christoph Hafemeister, Ivan G. Costa, Alexander Schönhuth, Alexander Schliep

Bioinform., 2011

pGQL: A probabilistic graphical query language for gene expression time courses.

Ruben Schilling, Ivan G. Costa, Alexander Schliep

BioData Min., 2011

Speeding Up Bayesian HMM by the Four Russians Method.

Md Pavel Mahmud, Alexander Schliep

Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011

2010

PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data.

Benjamin Georgi, Ivan Gesteira Costa, Alexander Schliep

BMC Bioinform., 2010

2009

Constrained mixture estimation for analysis and robust classification of clinical time series.

Ivan G. Costa, Alexander Schönhuth, Christoph Hafemeister, Alexander Schliep

Bioinform., 2009

2008

Efficient Algorithms for the Computational Design of Optimal Tiling Arrays.

Alexander Schliep, Roland Krause

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

New, Improved, and Practical k-Stem Sequence Similarity Measures for Probe Design.

Anthony J. Macula, Alexander Schliep, Morgan A. Bishop, Thomas E. Renz

J. Comput. Biol., 2008

Clustering cancer gene expression data: a comparative study.

Marcílio Carlos Pereira de Souto, Ivan G. Costa, Daniel S. A. de Araujo, Teresa Bernarda Ludermir, Alexander Schliep

BMC Bioinform., 2008

Inferring differentiation pathways from gene expression.

Ivan G. Costa, Stefan Roepcke, Christoph Hafemeister, Alexander Schliep

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

Ranking and selecting clustering algorithms using a meta-learning approach.

Marcílio Carlos Pereira de Souto, Ricardo Bastos Cavalcante Prudêncio, Rodrigo G. F. Soares, Daniel S. A. de Araujo, Ivan G. Costa, Teresa Bernarda Ludermir, Alexander Schliep

Proceedings of the International Joint Conference on Neural Networks, 2008

Comparative study on normalization procedures for cluster analysis of gene expression datasets.

Marcílio Carlos Pereira de Souto, Daniel S. A. de Araujo, Ivan G. Costa, Rodrigo G. F. Soares, Teresa Bernarda Ludermir, Alexander Schliep

Proceedings of the International Joint Conference on Neural Networks, 2008

08301 Final Report - Group Testing in the Life Sciences.

Alexander Schliep, Nicolas Thierry-Mieg, Amin Shokrollahi

Proceedings of the Group Testing in the Life Sciences, 20.07. - 25.07.2008, 2008

2007

Integer linear programming approaches for non-unique probe selection.

Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert

Discret. Appl. Math., 2007

Identifying protein complexes directly from high-throughput TAP data with Markov random fields.

Wasinee Rungsarityotin, Roland Krause, Arno Schödl, Alexander Schliep

BMC Bioinform., 2007

Semi-supervised learning for the identification of syn-expressed genes from fused microarray and <i>in situ </i>image data.

Ivan G. Costa, Roland Krause, Lennart Opitz, Alexander Schliep

BMC Bioinform., 2007

Validating Gene Clusterings by Selecting Informative Gene Ontology Terms with Mutual Information.

Ivan G. Costa, Marcílio Carlos Pereira de Souto, Alexander Schliep

Proceedings of the Advances in Bioinformatics and Computational Biology, 2007

Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach.

Alexander Schliep, Roland Krause

Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

Context-Specific Independence Mixture Modelling for Protein Families.

Benjamin Georgi, Jörg Schultz, Alexander Schliep

Proceedings of the Knowledge Discovery in Databases: PKDD 2007, 2007

Detecting functional modules from heterogenous mass data.

Alexander Schliep

Proceedings of the LWA 2007: Lernen - Wissen, 2007

Mixture Model Based Group Inference in Fused Genotype and Phenotype Data.

Benjamin Georgi, M. Anne Spence, Pamela Flodman, Alexander Schliep

Proceedings of the Data Analysis, Machine Learning and Applications, 2007

2006

Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree.

Alexander Schliep, Sven Rahmann

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

Context-specific independence mixture modeling for positional weight matrices.

Benjamin Georgi, Alexander Schliep

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

Joint Analysis of In-situ Hybridization and Gene Expression Data.

Lennart Opitz, Alexander Schliep, Stefan Posch

Proceedings of the Advances in Data Analysis, 2006

2005

Analyzing Gene Expression Time-Courses.

Alexander Schliep, Ivan G. Costa, Christine Steinhoff, Alexander Schönhuth

IEEE ACM Trans. Comput. Biol. Bioinform., 2005

The Graphical Query Language: a tool for analysis of gene expression time-courses.

Ivan G. Costa, Alexander Schönhuth, Alexander Schliep

Bioinform., 2005

An Indicator for the Number of Clusters: Using a Linear Map to Simplex Structure.

Marcus Weber, Wasinee Rungsarityotin, Alexander Schliep

Proceedings of the From Data and Information Analysis to Knowledge Engineering, 2005

On External Indices for Mixtures: Validating Mixtures of Genes.

Ivan G. Costa, Alexander Schliep

Proceedings of the From Data and Information Analysis to Knowledge Engineering, 2005

2004

Robust inference of groups in gene expression time-courses using mixtures of HMMs.

Alexander Schliep, Christine Steinhoff, Alexander Schönhuth

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

Optimal robust non-unique probe selection using Integer Linear Programming.

Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2003

Using hidden Markov models to analyze gene expression time course data.

Alexander Schliep, Alexander Schönhuth, Christine Steinhoff

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

Group Testing With DNA Chips: Generating Designs and Decoding Experiments.

Alexander Schliep, David C. Torney, Sven Rahmann

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2002

Selecting signature oligonucleotides to identify organisms using DNA arrays.

Lars Kaderali, Alexander Schliep

Bioinform., 2002

ProClust: improved clustering of protein sequences with an extended graph-based approach.

P. Pipenbacher, Alexander Schliep, Sebastian Schneckener, Alexander Schönhuth, Dietmar Schomburg, Rainer Schrader

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001

A new Algorithm for Accelerating Pair-Wise Computations of Melting Temperature.

Lars Kaderali, Alexander Schliep

Electron. Notes Discret. Math., 2001

Strongly Connected Components can Predict Protein Structure.

Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader

Electron. Notes Discret. Math., 2001

Clustering protein sequences-structure prediction by transitive homology.

Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader

Bioinform., 2001

1999

Learning Hidden Markov Model Topology.

Alexander Schliep

Proceedings of the German Conference on Bioinformatics, 1999

1998

Screening large clone libraries efficiently.

Norman A. Doggett, Jonathan Longmire, Alexander Schliep, David C. Torney

Proceedings of the German Conference on Bioinformatics, 1998

1996

Interpretation of Pooling Experiments Using the Markov Chain Monte Carlo Method.

Emanuel Knill, Alexander Schliep, David C. Torney

J. Comput. Biol., 1996