Alexander García Castro

According to our database, Alexander García Castro authored at least 39 papers between 2005 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

Ten simple rules to run a successful BioHackathon.

Leyla J. García, Erick Antezana, Alexander García Castro, Evan Bolton, Rafael C. Jiménez, Pjotr Prins, Juan M. Banda, Toshiaki Katayama

PLoS Comput. Biol., 2020

BioHackathon 2015: Semantics of data for life sciences and reproducible research.

Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi

F1000Research, 2020

2017

Using semantics for representing experimental protocols.

Olga L. Giraldo, Alexander García Castro, Federico López, Óscar Corcho

J. Biomed. Semant., 2017

Bioschemas: schema.org for the Life Sciences.

Leyla J. García, Olga L. Giraldo, Alexander García Castro, Michel Dumontier, Bioschemas Community

Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

Shō-coin: A Knowledge-Based Economy for Life Sciences.

Alexander García Castro, Erick Antezana, Jael García, Olga L. Giraldo, Pjotr Prins, Rutger A. Vos

Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

2015

In the pursuit of a semantic similarity metric based on UMLS annotations for articles in PubMed Central Open Access.

Leyla Jael García Castro, Rafael Berlanga Llavori, Alexander García Castro

J. Biomed. Informatics, 2015

Building Domain Ontologies Out of Folksonomies and Linked Data.

Andrés García-Silva, Leyla Jael García Castro, Alexander García Castro, Óscar Corcho

Int. J. Artif. Intell. Tools, 2015

Digital Scholarship and Open Science in Psychology and the Behavioral Sciences (Dagstuhl Perpectives Workshop 15302).

Alexander García Castro, Janna Hastings, Robert Stevens, Erich Weichselgartner

Dagstuhl Reports, 2015

Using Semantics and NLP in Experimental Protocols.

Olga L. Giraldo, Alexander García Castro, Óscar Corcho, Jose Figueredo

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

KOBPSY, a knowledge base in psychology and behavioral sciences.

Alexander García Castro, Isabel Barth, Erich Weichselgartner

Proceedings of the 15th International Conference on Knowledge Technologies and Data-driven Business, 2015

Using Semantics and NLP in the SMART Protocols Repository.

Olga L. Giraldo, Alexander García Castro, Óscar Corcho

Proceedings of the International Conference on Biomedical Ontology, 2015

2014

BioJS: an open source standard for biological visualisation - its status in 2014.

Manuel Corpas, Rafael C. Jiménez, Seth Carbon, Alexander García Castro, Leyla Jael Castro, Tatyana Goldberg, John Gómez, Alex Kalderimis, Suzanna E. Lewis, Ian Mulvany, Aleksandra Pawlik, Francis Rowland, Gustavo A. Salazar, Fabian Schreiber, Ian Sillitoe, William Spooner, Anil S. Thanki, Jose M. Villaveces, Guy Yachdav, Henning Hermjakob

F1000Research, 2014

Social Tags and Linked Data for Ontology Development: A Case Study in the Financial Domain.

Andrés García-Silva, Leyla Jael García Castro, Alexander García Castro, Óscar Corcho

Proceedings of the 4th International Conference on Web Intelligence, 2014

SMART Protocols: SeMAntic RepresenTation for Experimental Protocols.

Olga L. Giraldo, Alexander García Castro, Óscar Corcho

Proceedings of the 4th Workshop on Linked Science 2014, 2014

2013

Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data.

Leyla Jael García Castro, Casey McLaughlin, Alexander García Castro

J. Biomed. Semant., 2013

BioJS: an open source JavaScript framework for biological data visualization.

John Gómez, Leyla J. García, Gustavo A. Salazar, Jose M. Villaveces, Swanand P. Gore, Alexander García Castro, Maria Jesus Martin, Guillaume Launay, Rafael Alcántara, Noemi del-Toro, Marine Dumousseau, Sandra E. Orchard, Sameer Velankar, Henning Hermjakob, Chenggong Zong, Peipei Ping, Manuel Corpas, Rafael C. Jiménez

Bioinform., 2013

Semantic Representation of CAD Models Based on the IGES Standard.

Nestor Velasco Bermeo, Miguel González-Mendoza, Alexander García Castro

Proceedings of the Advances in Artificial Intelligence and Its Applications, 2013

Connections across Scientific Publications based on Semantic Annotations.

Leyla Jael García Castro, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann, Alexander García Castro

Proceedings of the 3rd Workshop on Semantic Publishing, 2013

2012

Conceptual Exploration of Documents and Digital Libraries in the Biomedical Domain.

Leyla Jael García Castro, Alexander García Castro, John Gómez

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

Towards the Creation of Semantic Models Based on Computer-Aided Designs.

Nestor Velasco Bermeo, Miguel González-Mendoza, Alexander García Castro, Irais Heras Dueñas

Proceedings of the Advances in Artificial Intelligence, 2012

Using annotations to model discourse: an extension to the Annotation Ontology.

Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro

Proceedings of the 2nd Workshop on Semantic Publishing, 2012

2011

DAS Writeback: A Collaborative Annotation System.

Gustavo A. Salazar, Rafael C. Jiménez, Alexander García Castro, Henning Hermjakob, Nicola J. Mulder, Edwin H. Blake

BMC Bioinform., 2011

Dasty3, a WEB framework for DAS.

Jose M. Villaveces, Rafael C. Jiménez, Leyla J. García, Gustavo A. Salazar, Bernat Gel, Nicola J. Mulder, Maria Jesus Martin, Alexander García Castro, Henning Hermjakob

Bioinform., 2011

A translational model for representing research articles.

Alexander García Castro, Leyla Jael García Castro

Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

Tagsty: augmented knowledge from community-based annotations on protein sequences.

Leyla Jael García Castro, Alexander García Castro

Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

Hyperontology for the Biomedical Ontologist: A Sketch and Some Examples.

Oliver Kutz, Till Mossakowski, Janna Hastings, Alexander García Castro, Aleksandra Sojic

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Annotating Experimental Records Using Ontologies.

Alexander García Castro, Olga L. Giraldo, Leyla J. García

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010

Developing Ontologies within Decentralised Settings.

Alexander García Castro, Kieran O'Neill, Leyla Jael García Castro, Phillip W. Lord, Robert Stevens, Óscar Corcho, Frank Gibson

Proceedings of the Semantic e-Science, 2010

Semantic Web and Social Web heading towards Living Documents in the Life Sciences.

Alexander García Castro, Alberto Labarga, Leyla J. García, Olga L. Giraldo, César Montaña, John A. Bateman

J. Web Semant., 2010

Using the Annotation Ontology in Semantic Digital Libraries.

Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro

Proceedings of the ISWC 2010 Posters & Demonstrations Track: Collected Abstracts, 2010

TagSorting: A Tagging Environment for Collaboratively Building Ontologies.

Leyla Jael García Castro, Martin Hepp, Alexander García Castro

Proceedings of the Knowledge Engineering and Management by the Masses, 2010

2009

Tags4Tags: Using Tagging to Consolidate Tags.

Leyla Jael García Castro, Martin Hepp, Alexander García Castro

Proceedings of the Database and Expert Systems Applications, 20th International Conference, 2009

Annotating Atomic Components of Papers in Digital Libraries: The Semantic and Social Web Heading towards a Living Document Supporting eSciences.

Alexander García Castro, Leyla Jael García Castro, Alberto Labarga, Olga L. Giraldo, César Montaña, Kieran O'Neill, John A. Bateman

Proceedings of the Database and Expert Systems Applications, 20th International Conference, 2009

2008

OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology.

Kieran O'Neill, Alexander García Castro, Anita Schwegmann, Rafael C. Jiménez, Dan Jacobson, Henning Hermjakob

BMC Bioinform., 2008

Dasty2, an Ajax protein DAS client.

Rafael C. Jiménez, Antony F. Quinn, Alexander García Castro, Alberto Labarga, Kieran O'Neill, Fernando Martinez, Gustavo A. Salazar, Henning Hermjakob

Bioinform., 2008

A Semantic Web Service Alignment Tool.

Dionysios D. Kehagias, Alexander García Castro, Dimitrios Tzovaras, Dimitrios Giakoumis

Proceedings of the Poster and Demonstration Session at the 7th International Semantic Web Conference (ISWC2008), 2008

CMAPS Supporting the Development of OWL Ontologies.

Alexander García Castro, Angela Norena, Andres Betancourt, Leyla J. García

Proceedings of the Poster and Demonstration Session at the 7th International Semantic Web Conference (ISWC2008), 2008

2006

The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case.

Alexander García Castro, Philippe Rocca-Serra, Robert Stevens, Chris F. Taylor, Karim Nashar, Mark A. Ragan, Susanna-Assunta Sansone

BMC Bioinform., 2006

2005

Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.

Alexander García Castro, Samuel Thoraval, Leyla J. García, Mark A. Ragan

BMC Bioinform., 2005